View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_38 (Length: 240)
Name: NF12001_high_38
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 40945658 - 40945873
Alignment:
| Q |
17 |
agttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcc |
116 |
Q |
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| T |
40945658 |
agttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcc |
40945757 |
T |
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| Q |
117 |
tcttcttgaatgcttgggagagtggaacggtgctcctcttcctatttgttaacnnnnnnngttattttataaaatgctttat---ttgtattttatacaa |
213 |
Q |
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| T |
40945758 |
tcttcttgaatgcttgggagagtggaacggtgctcctcttccaatttgttaactttgttggttaattatgaaaatgctttatttgttgtattttatacaa |
40945857 |
T |
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| Q |
214 |
gtgtatcaataatcat |
229 |
Q |
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||||||||| |||||| |
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| T |
40945858 |
gtgtatcaaaaatcat |
40945873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 40959623 - 40959834
Alignment:
| Q |
17 |
agttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959623 |
agttgggaactggtttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcc |
40959722 |
T |
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| Q |
117 |
tcttcttgaatgcttgggagagtggaacggtgctcctcttcctatttgttaacnnnnnnngttattttataaaatgctttatttgtattttatacaagtg |
216 |
Q |
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| T |
40959723 |
tcttcttgaatgcttgggagagtggaacggtgctcctcttccaatttgttaactttgttggttaattctgaaaatgttttatttgta-tctatacaagtg |
40959821 |
T |
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| Q |
217 |
tatcaataatcat |
229 |
Q |
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|| |||||||||| |
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| T |
40959822 |
taacaataatcat |
40959834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 28183714 - 28183610
Alignment:
| Q |
64 |
gaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaacggtgctcctcttcctattt |
163 |
Q |
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|||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||| | ||||| | |||||||||||||| ||||||||||| |||| |
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| T |
28183714 |
gaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcctcttccaattt |
28183615 |
T |
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| Q |
164 |
gttaa |
168 |
Q |
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||||| |
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| T |
28183614 |
gttaa |
28183610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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