View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_39 (Length: 239)
Name: NF12001_high_39
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 54701978 - 54701770
Alignment:
| Q |
19 |
cgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctttgcaatagctttcttca |
118 |
Q |
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| T |
54701978 |
cgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctctgcaatagctttcttca |
54701879 |
T |
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| Q |
119 |
tcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccgtagttcatgcatga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54701878 |
tcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccttagttcatgcatga |
54701779 |
T |
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| Q |
219 |
tatcctttg |
227 |
Q |
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||||||||| |
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| T |
54701778 |
tatcctttg |
54701770 |
T |
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