View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_41 (Length: 236)
Name: NF12001_high_41
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_41 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12631072 - 12631307
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631072 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
12631171 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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| T |
12631172 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
12631271 |
T |
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| Q |
201 |
tctatccatgcatttcttgaacttttcatctttttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12631272 |
tctatccatgcatttcttgaacttttcatctttttc |
12631307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 45288882 - 45289117
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288882 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
45288981 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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| T |
45288982 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctaatatttttgtagttcatgaaagtttctatttgcctttactcataagtg |
45289081 |
T |
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| Q |
201 |
tctatccatgcatttcttgaacttttcatctttttc |
236 |
Q |
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| T |
45289082 |
tctatcgatgcatttcttgaacttttcatctttttc |
45289117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31607904 - 31607683
Alignment:
| Q |
1 |
cggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607904 |
cggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagctactttc |
31607805 |
T |
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| Q |
101 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactcataagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
31607804 |
tagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcatttactcataagtg |
31607705 |
T |
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| Q |
201 |
tctatccatgcatttcttgaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31607704 |
tctatccatgcatttcttgaac |
31607683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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