View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_42 (Length: 235)
Name: NF12001_high_42
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 52848725 - 52848519
Alignment:
| Q |
15 |
agaattgatatcaattgggggccttgatccaactgttaatgcaaaactgagttctactattgcacaaatcattcaaactaacttacacattcatagctcc |
114 |
Q |
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| T |
52848725 |
agaattgatatcaattgggggccttgatccaactgttaatgcaaaactgagttctactattgcacaaatcattcaaactaacttacacattcatagctcc |
52848626 |
T |
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| Q |
115 |
cgattctacatcaaattttctgatgtgcaggtcaatttctgctttcttctattttatgagatacgacattgcttgattacattctacatctcattttttg |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52848625 |
cgattctacatcaaattttctgatgttcaggtcaatttctgctttcttctattttatgagatacgacattgcttgattacattctacatctcattttttg |
52848526 |
T |
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| Q |
215 |
tgttctt |
221 |
Q |
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||||||| |
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| T |
52848525 |
tgttctt |
52848519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 52852711 - 52852593
Alignment:
| Q |
15 |
agaattgatatcaattgggggccttgatccaactgttaatgcaaaactgagttctactattgcacaaatcattcaaactaacttacacattcatagctcc |
114 |
Q |
| |
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|||| ||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||| |
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| T |
52852711 |
agaactgatatcaattggcggacttggtccaagtgttaatgcaaaactgagttctactattgcacaaatccttcaaactaaactatacattgatagctcc |
52852612 |
T |
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| Q |
115 |
cgattctacatcaaatttt |
133 |
Q |
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|||||||||||||||||| |
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| T |
52852611 |
agattctacatcaaatttt |
52852593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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