View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_high_5 (Length: 465)
Name: NF12001_high_5
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 14724003 - 14723567
Alignment:
| Q |
16 |
acatcacaaagaggactaatccattcagttttagccaacacaaaggaacccaaatcatctctgatacacattctgattcccaccctgtttaactttttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
14724003 |
acatcacaaagaggactaatccattcagttttagccaacaaaaaggaacccaaatcatccctgatacacattctgattcccaccctgtttaactgtttga |
14723904 |
T |
|
| Q |
116 |
aggaagcatcaatgttacattcgaatctaccttccataggtttctgccatcttgggtattgaacaggtctttgcatactagaaagtggttggcgaaaatc |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14723903 |
aggaagcatcaatgttacatttgaatctaccttccataggtttctgccatcttgggtattgaacaggtctttgcatactagaaagtggttggtgaaaatc |
14723804 |
T |
|
| Q |
216 |
cttggctgccttcgagtcatccaataaggtctttgcacgctcaaaaacgagacgttgtgcgtcagtcacctcattccaaaccttgttgttcctttgtttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14723803 |
cttggctgccttcgagtcatccaataaggtctttgcacgctcaaaaacgagacgttgtgcgtcagtcacctcattccaaaccttgttgttcctttgtttt |
14723704 |
T |
|
| Q |
316 |
caaatgctccacaaagtacaacaaaacaaggccgcatcactatcattcaacacctgcaacatattgaaaataattccagcactatcttgtccttgattta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14723703 |
caaatgctccacaaagtacaacaaaacaaggccgcatcactatcattcagcgcctgcaacatattgaaaataattccagcactatcttgtccttgattta |
14723604 |
T |
|
| Q |
416 |
taacccactc-atagattgaaatgcatcaaacatagt |
451 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
14723603 |
taacccactcaatagattgaaatgcatcaaacatagt |
14723567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 38860585 - 38860529
Alignment:
| Q |
286 |
tcattccaaaccttgttgttcctttgtttccaaatgctccacaaagtacaacaaaac |
342 |
Q |
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| T |
38860585 |
tcattccaaacattgttatttctttgcttccaaatgctccacaaaatgcaacaaaac |
38860529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 45421412 - 45420974
Alignment:
| Q |
16 |
acatcacaaagaggactaatccattcagttttagccaacacaaaggaacccaaatcatctctgatacacattctgattcccaccctgtttaactttttg- |
114 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||| | ||||| || ||||| ||| ||||||||| ||||||||| | ||| |
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| T |
45421412 |
acatcacaaagaggactaatcgattcagttctagccaacacaaaggaacctgagtcatccctaatacaaattttgattcccatcctgtttaaatgcttgg |
45421313 |
T |
|
| Q |
115 |
--aaggaagcatcaatgttacattcgaatctaccttccataggtttctgccatcttgggtattgaacaggtctttgcatactagaaagtggttggcgaaa |
212 |
Q |
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|||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
45421312 |
agaaggaagcatcaatattgcatttgaatctaccttccataggtttctgccatcttgggtattgaacaagtctttgcatactagaagttggttggcgaaa |
45421213 |
T |
|
| Q |
213 |
atccttggctgccttcgagtcatccaataaggtctttgcacgctcaaaaacgagacgttgtgcgtcagtcacctcattccaaaccttgttgttcctttgt |
312 |
Q |
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|||||| |||| |||| |||||| | ||| |||||||| || | |||||||| || || |||||||||||| |||||||||||||| || ||||||||| |
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| T |
45421212 |
atccttagctgtcttccggtcatctagtaaagtctttgcgcggtaaaaaacgaaactttatgcgtcagtcacttcattccaaaccttattattcctttgt |
45421113 |
T |
|
| Q |
313 |
ttccaaatgctccacaaagtacaacaaaacaaggccgcatcactatcattcaacacctgcaacatattgaaaataattccagcactatcttgtccttgat |
412 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||| || ||||||||||||||||| || || ||||||| |
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| T |
45421112 |
ttccaaatgctccacaaagtacaacaaaacaaggctgcatcaccagcattcaacacctgcagcatgttaaaaataattccagcactgtcctgaccttgat |
45421013 |
T |
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| Q |
413 |
tta-taacccactcatagattgaaatgcatcaaacatag |
450 |
Q |
| |
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||| || |||||||||||||||||| || |||||||||| |
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| T |
45421012 |
ttattaccccactcatagattgaaaagcgtcaaacatag |
45420974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 3982033 - 3982472
Alignment:
| Q |
16 |
acatcacaaagaggactaatccattcagttttagccaacacaaaggaacccaaatcatctctgatacacattctgattcccaccctgtttaactttttg- |
114 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||||| | ||| |
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| T |
3982033 |
acatcacaaagaggactaatccattcggttctagccaacacaaaggaacctgagtcatccctaatacaaattctgattcccaccctgtttaaatgcttgg |
3982132 |
T |
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| Q |
115 |
--aaggaagcatcaatgttacattcgaatctaccttccataggtttctgccatcttgggtattgaacaggtctttgcatactagaaagtggttggcgaaa |
212 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
3982133 |
agaaggatgcatcaatattgcatttgaatctaccttccaagggtttctgccatcttggatattgaacaggtctttgcatattagaagttggttggcaaaa |
3982232 |
T |
|
| Q |
213 |
atccttggctgccttcgagtcatccaataaggtctttgcacgctcaaaaacgagacgttgtgcgtcagtcacctcattccaaaccttgttgttcctttgt |
312 |
Q |
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|||||| |||| |||| ||||||| | ||| |||||||| || |||||||||| | |||||||||||||| |||||||||||||| || ||||||||| |
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| T |
3982233 |
atccttagctgtcttccagtcatctagtaaagtctttgcgcggtcaaaaacgaatctttgtgcgtcagtcaattcattccaaaccttattattcctttgt |
3982332 |
T |
|
| Q |
313 |
ttccaaatgctccacaaagtacaacaaaacaaggccgcatcactatcattcaacacctgcaacatattgaaaataattccagcactatcttgtccttgat |
412 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||| ||| || |||||| |||||||||| || || ||||||| |
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| T |
3982333 |
ttccaaatgctccacaaagtacaacaaaacaaggctgcatcaccagcattcagcacctgcagcatgttaaaaatatttccagcactgtcctggccttgat |
3982432 |
T |
|
| Q |
413 |
ttat-aacccactcatagattgaaatgcatcaaacatagt |
451 |
Q |
| |
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|||| | |||||||||||||||||| |||||||||||||| |
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| T |
3982433 |
ttatcaccccactcatagattgaaaagcatcaaacatagt |
3982472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 419
Target Start/End: Original strand, 52612 - 52785
Alignment:
| Q |
246 |
ctttgcacgctcaaaaacgagacgttgtgcgtcagtcacctcattccaaaccttgttgttcctttgtttccaaatgctccacaaagtacaacaaaacaag |
345 |
Q |
| |
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|||||| | ||||||||| | || |||||| || |||||||||||| || |||||| || |||||||||||||| ||||||||| ||||||||| | |
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| T |
52612 |
ctttgcgcactcaaaaacaaaacattgtgcatctatcacctcattcctaatcttgttatttctttgtttccaaatactccacaaaagacaacaaaatagc |
52711 |
T |
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| Q |
346 |
gccgcatcactatcattcaacacctgcaacatattgaaaataattccagcactatcttgtccttgatttataac |
419 |
Q |
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|||||||||| | ||| | ||||| || ||||| |||||||||||| |||||||||| |||||||| ||||| |
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| T |
52712 |
gccgcatcaccaccatctagaacctgtaagatattaaaaataattccaacactatcttgaccttgattaataac |
52785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 14665489 - 14665522
Alignment:
| Q |
291 |
ccaaaccttgttgttcctttgtttccaaatgctc |
324 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |
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| T |
14665489 |
ccaaatcttgttgttcctttgtttccaaatgctc |
14665522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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