View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12001_high_6 (Length: 439)
Name: NF12001_high_6
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 35243536 - 35243724
Alignment:
| Q |
19 |
gaatatgtgaaggaacttgggttgggattgcttggtttggggaagggtgaaaagattttgtgtatgctttgtactttgtagagaatttctgataaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35243536 |
gaatatgtgaaggaacttgggttgggattgcttggtttggggaagggtgaaaagattttgtgtatgctttgtactttgtagagaatttctgataaggaag |
35243635 |
T |
|
| Q |
119 |
gtgcttcggagattcattgaatctattgtggaggattcatagtagaagttaaggtaagtattttagaagaaacttgtaaaacaaatggg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
35243636 |
gtgcttcggagattcattgaatctattgtggaggattcatagtagaagttaaggtaagtattttagaaaaaacttgtaaaagaaatggg |
35243724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 221 - 433
Target Start/End: Original strand, 35243780 - 35243988
Alignment:
| Q |
221 |
gtattgatcattcgtagctctaggtttcagtctcacatgataaattaatgaaattaatatgctatatactatgaaagagtcatggtttaaagtttaattc |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35243780 |
gtattgatcattagtagctctaggtttcagtctcacatgataaattaatgaaattaatatgctatata---tgaaagagtcatggtttaaagtttaattc |
35243876 |
T |
|
| Q |
321 |
tgcacaaaccaactattcctctaactatagttgctgtattactcagnnnnnnncgatatttgctccataagccaatcgtgtgatatgagacaacataatc |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35243877 |
tgcacaaaccaactattcctataactatagttgctgtattactcag-aaaaaacgatatttgctccataagccaatcgtgtgatatgagacaacataatc |
35243975 |
T |
|
| Q |
421 |
ccatctctgcttc |
433 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
35243976 |
ccatctgtgcttc |
35243988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 35232104 - 35232211
Alignment:
| Q |
19 |
gaatatgtgaaggaacttg---ggttgggattgcttggtttggggaagggtgaaaagattttgtgtatgctttgtactttgtagagaatttctgataagg |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
35232104 |
gaatatgtgaaggaacttgctgggttgggattgcttggtttggggaaggctgagaagagtttgtgcatg-------ctttgtagagaatttgtgataagg |
35232196 |
T |
|
| Q |
116 |
aaggtgcttcggaga |
130 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
35232197 |
aaggtgctttggaga |
35232211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University