View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12001_high_7 (Length: 434)
Name: NF12001_high_7
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 2990322 - 2989911
Alignment:
| Q |
18 |
gcatcattgtagattatctattgatacaaagtgcttaaacttgaagataaggaatgtctattaatacatgctatctattcaaaataaaattgttaatata |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2990322 |
gcatcattgtagattatctactgatacaaagtgcttaaacttgaagataaggaatgtctattaatacatgctatctattcaaaataaaattgtaaatata |
2990223 |
T |
|
| Q |
118 |
gaaatgagtcattgagttaaatattcacaatacaatttcaatgatggagtaaatgcagcacaacatcctcaacagaacttcataatgaactagtgatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2990222 |
gaaatgagtcattgagttaaatattcacaatacaatttcaatgatggagtaaatgcagcacaacatcctcaacagaacttcataatgaactagtgatttt |
2990123 |
T |
|
| Q |
218 |
aattttgtttgtgtaattatataattgaatggtagctgaagtacttctctagcactagggacaagatctctgaattaaaaaattaaagcaaagttatggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2990122 |
aattttgtttgtgtaattatataattgaatggtagctgaagtacttctctagcactagggacaagatctctgaattaaaaaattaaagcaaagttatggc |
2990023 |
T |
|
| Q |
318 |
acacgtatgatgtagg----gtatgagaaattgattatgaaatgtggtagctgcaatcatcatctaaccnnnnnnnncctattaaaagacgttccctttc |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2990022 |
acacgtatgatgtagggtctgtatgagaaattgattatgaaatgtggtagctgcaattatcatctaaccttttttttcctattaaaagacgttccctttc |
2989923 |
T |
|
| Q |
414 |
ttttgcctttgc |
425 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2989922 |
ttttgcctttgc |
2989911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University