View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_10 (Length: 424)
Name: NF12001_low_10
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 31645579 - 31645184
Alignment:
| Q |
11 |
cacagacttaagagcggaagtgtcaattttttctaaaaagagttggtgataccaattgctatacattatgtgtcacattctttaactcttgagtgctgtg |
110 |
Q |
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| T |
31645579 |
cacaaactcaagagcggaagtgtcaattttttctaaaaagagttggtgataccaattgctatacattatgtgtcacattctttaactcttgagtgctgtg |
31645480 |
T |
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| Q |
111 |
gttgattagtagataattgttacaattcttgcttttggttttctttgaatttcaggctgcacagataaaggttataggccttaggaatgcttgaatgatt |
210 |
Q |
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| T |
31645479 |
gttgattagtagataattgttacaattcttgcttttggttttctttgaatttcaggctgcacagataaaggttataggccttaggaatgcttgaatgatt |
31645380 |
T |
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| Q |
211 |
aatattttagaaagcacttacacatacatgacagggataccaaatacaacacgaataccaacaattggacaatgttgatgtccaaatatattaattaaga |
310 |
Q |
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| T |
31645379 |
aattttttagaaagcacttacacatacatgacagggacaccaaatacaacacgaacaccaacaattggacaatgttgatgtccaaatatattaattaaga |
31645280 |
T |
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| Q |
311 |
agattaaatatgagaatcatggataaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaatagg |
406 |
Q |
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| T |
31645279 |
agattaaatatgagaatcgtggataaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaatagg |
31645184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 54173689 - 54173618
Alignment:
| Q |
335 |
aaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaatagg |
406 |
Q |
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|||||||||||||| |||||| |||||||| |||||| |||||||| |||| ||||| | |||||||||| |
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| T |
54173689 |
aaatatctaaattgagaatcatgatgaccaccaagacagaatgaagatgaagaccataacaaatgaaatagg |
54173618 |
T |
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