View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_12 (Length: 422)
Name: NF12001_low_12
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 42126765 - 42127155
Alignment:
| Q |
13 |
agatggacatctcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaaga |
112 |
Q |
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| T |
42126765 |
agatggacatttcaggagtaagagcgtagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaaga |
42126864 |
T |
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| Q |
113 |
aagtggtgccaaggcaagtgaaaatatatagtttgacaaaggaattctatatgctgatttaccgaaacttgcgatgagtatttggaaagtagtgatggaa |
212 |
Q |
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| T |
42126865 |
aagtggtgccaaggcaagtgaaaatatatagtttgacaaaggaattccatatgctgatttaccgaaacttgcgatgaatatttggaaagtagtgatggaa |
42126964 |
T |
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| Q |
213 |
agataagcaggagaaaccaacaggatagaaatgaaaacaagtgccaagagttgaagtaaatgtatactccactggtgtgacttggacacatccacaataa |
312 |
Q |
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| T |
42126965 |
agataagcaggagaaaccacaaggatagaaatgaaaacaagtgccaagagttgaagtaaatgtatactccactggtgagacttggacacatccacaataa |
42127064 |
T |
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| Q |
313 |
attcagtagactcagtttcagcttctggagcataggatggattgctcaaaaggtgaggttgtgacttcagcagaaggttctctgagaagtt |
403 |
Q |
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| T |
42127065 |
attcagtagactcagtttcagcttctggagcataggatggattgctcaaaaggtgaggttgtgacttcagcagaaggttctctgagaagtt |
42127155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 24930101 - 24930168
Alignment:
| Q |
54 |
aaagaatttccaaaaaatgaaatgcaaatgcatgtagaagcaatgcaaaggatccaagaaagtggtgc |
121 |
Q |
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| T |
24930101 |
aaagaacttccaaacaatgaaatgcaaacgcaagtggaagcgatgcaaagaatccaagcaagaggtgc |
24930168 |
T |
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