View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_15 (Length: 401)
Name: NF12001_low_15
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_15 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 35045338 - 35045728
Alignment:
| Q |
6 |
agtattcatggatttctatgagtgcagggtgtggatgctaattagagagataagcagggactgtctttattgcatttagtatctctctcactcttcggca |
105 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35045338 |
agtattcatggatttctatgaatgcacggtgtggatgctaattactgagataagcagggactgtctttattgcatttggtatctctctcactcttcggca |
35045437 |
T |
|
| Q |
106 |
tctttgtgctcgggttgatataattttcataatcatatagtgcatagacactaattataatactctctgtaggtggcagttttcaatcaaaccgatatag |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35045438 |
tctttgtgctcgggttgatataattttcttaatcatatagtggatatacactaattataatactctctgtaggcggcagttttcaatcaaaccgatatag |
35045537 |
T |
|
| Q |
206 |
ttttcattctcatggattcggggaaaaatctggagtataaaaatgcacaaggtaataaatacttttccttccttaaattcaacaaatggccatttcagcc |
305 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||| |||||||||| |
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| T |
35045538 |
ttttcattctcatggattcgggggaaaatctggagtataaaaatggacaaggtaataagtacttttcctttcttaaattcagtaaatggtcatttcagcc |
35045637 |
T |
|
| Q |
306 |
tggatcctctgcaatgatcttaaagatatatttgaataataattgacagcaaatattgttgaatgaatgtaaacactaattctctgcttct |
396 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
35045638 |
cggatcctctgcaatgatcttaaagacatatctgaataataattgacagcaaatattgttgaatgaatgcaaacactaattccctgtttct |
35045728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 79 - 396
Target Start/End: Original strand, 41380858 - 41381175
Alignment:
| Q |
79 |
atttagtatctctctcactcttcggcatctttgtgctcgggttgatataattttcataatcatatagtgcatagacactaattataatactctctgtagg |
178 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
41380858 |
atttggtatctctctcactcttcggcatctttgtgctcgggttgatataattttcttaatcatatagtggatatatactaattataatactctctgtagg |
41380957 |
T |
|
| Q |
179 |
tggcagttttcaatcaaaccgatatagttttcattctcatggattcggggaaaaatctggagtataaaaatgcacaaggtaataaatacttttccttcct |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
41380958 |
cggcagttttcaatcaaaccgatatagttttcattctcatggattcgggggaaaatctggagtataaaaatgcacaaggtaataaatatttttcctttct |
41381057 |
T |
|
| Q |
279 |
taaattcaacaaatggccatttcagcctggatcctctgcaatgatcttaaagatatatttgaataataattgacagcaaatattgttgaatgaatgtaaa |
378 |
Q |
| |
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|||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||| |
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| T |
41381058 |
taaattcagtaaatggtcatttcagcccggatcctctgcaatgatcttaaagacatatctgaataataattgacatcaaatattgttgaatgaatgcaaa |
41381157 |
T |
|
| Q |
379 |
cactaattctctgcttct |
396 |
Q |
| |
|
||||||||| ||| |||| |
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| T |
41381158 |
cactaattccctgtttct |
41381175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 15360 - 15671
Alignment:
| Q |
6 |
agtattcatggatttctatgagtgcagggtgtggatgctaattagagagataagcagggactgtctttattgcatttagtatctctctcactcttcggca |
105 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
15360 |
agtattcatggatttctatgaatgcacggtgtggatgctaattactgagataagcagggactgtctttattgcatttggtatctctctcattcttcggca |
15459 |
T |
|
| Q |
106 |
tctttgtgctcgggttgatataattttcataatcatatagtgcatagacactaattataatactctctgtaggtggcagttttcaatcaaaccgatatag |
205 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |
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| T |
15460 |
tctttgtgctcgggttgatataattttcttgatcatatagtggatatacactaattataatactctctgtaggcggcagtttttaatcaaaccgatttag |
15559 |
T |
|
| Q |
206 |
ttttcattctcatggattcggggaaaaatctggagtataaaaatgcacaaggtaataaatacttttccttccttaaattcaacaaatggccatttcagcc |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||| |||||||||| |
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|
| T |
15560 |
ttttcattctcatggattcgggggaaaatctggagtataaaaatggacaagataataaatacttttcctttcttaaattcagcaaatggtcatttcagcc |
15659 |
T |
|
| Q |
306 |
tggatcctctgc |
317 |
Q |
| |
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||||||||||| |
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| T |
15660 |
cggatcctctgc |
15671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 384
Target Start/End: Original strand, 51441452 - 51441827
Alignment:
| Q |
6 |
agtattcatggatttctatgagtgcagggtgtggatgctaattagagagataagcagggactgtctttattgcatttagtatctctctcactcttcggca |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
51441452 |
agtattcatggatttctatg----cagggtgtggatgctaattacagagataagcagggactgtctttattgcatttggtatctctctcactcttcagca |
51441547 |
T |
|
| Q |
106 |
tctttgtgctcgggttgatataattttcataatcatatagtgcatagacactaattataatactctctgtaggtggcagttttcaatcaaaccgatatag |
205 |
Q |
| |
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| ||||||||| || ||||||| ||||| ||||||||||||| || |||||||||| ||||| ||| |||||| ||||||||||||||||| ||||||| |
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| T |
51441548 |
tgtttgtgctcaggatgatatagttttcttaatcatatagtggattgacactaattttaatattctgtgtaggctgcagttttcaatcaaactgatatag |
51441647 |
T |
|
| Q |
206 |
ttttcattctcatggattcggggaaaaatctggagtataaaaatgcacaaggtaataaatacttttccttccttaaattcaacaaatggccatttcagcc |
305 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||| ||| |
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|
| T |
51441648 |
ttttcattctcatggattcgggggcaaacctggagtataaaaatgcacaaggtaaaaaatacttttccttccttaaattcagccaatggcagtttcggcc |
51441747 |
T |
|
| Q |
306 |
tggatcctctgcaatgatcttaaagatatatttgaat-aataattgacagcaaatattgttgaatgaatgtaaacactaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||| | |||||||||||||||| |||||| ||||||||| |
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|
| T |
51441748 |
cggatcctctgcaatgatcttaaagatagatctgaataaataataggcagcaaatattgttgagtgaatgcaaacactaa |
51441827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 171 - 396
Target Start/End: Original strand, 11910041 - 11910266
Alignment:
| Q |
171 |
tctgtaggtggcagttttcaatcaaaccgatatagttttcattctcatggattcggggaaaaatctggagtataaaaatgcacaaggtaataaatacttt |
270 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11910041 |
tctgtaggcgacagttttcaatcaaaccgatatagttttcattcttgtggattcgggggaaaatctggagtataaaaatgcacaaggtaataaatacttt |
11910140 |
T |
|
| Q |
271 |
tccttccttaaattcaacaaatggccatttcagcctggatcctctgcaatgatcttaaagatatatttgaataataattgacagcaaatattgttgaatg |
370 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11910141 |
tccttccttaaattcagcaaatggccatttcagcccggatcctctgcaatgatcttaaagatatatctgaataataattgacagcaaatattgttgaatg |
11910240 |
T |
|
| Q |
371 |
aatgtaaacactaattctctgcttct |
396 |
Q |
| |
|
|||| |||||||||||| |||||||| |
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|
| T |
11910241 |
aatgcaaacactaattccctgcttct |
11910266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 4888491 - 4888383
Alignment:
| Q |
288 |
caaatggccatttcagcctggatcctctgcaatgatcttaaagatatatttgaataataattgacagcaaatattgttgaatgaatgtaaacactaattc |
387 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4888491 |
caaatggtcatttcagcccggatcctctgcaatgatcttaaagacatatctgaataataattgacagcaaatattgttgaatggatgcaaacactaattc |
4888392 |
T |
|
| Q |
388 |
tctgcttct |
396 |
Q |
| |
|
||||||| |
|
|
| T |
4888391 |
catgcttct |
4888383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 11909991 - 11910034
Alignment:
| Q |
6 |
agtattcatggatttctatgagtgcagggtgtggatgctaatta |
49 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11909991 |
agtattcatggatttctatgaatgcagggtgtggatgctaatta |
11910034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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