View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_16 (Length: 400)
Name: NF12001_low_16
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 25741663 - 25741291
Alignment:
| Q |
12 |
agagattcagaaacagtttgggaatttatcaatgtcaacattggttgctggtgtgtcacatgtttgtggtttaactcttgatagagttttggtttgtaaa |
111 |
Q |
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| T |
25741663 |
agagattcagaaacagtttgggaatttatcaatgtcaacattggttgctggtgtgtcacatgtttgtggtttaactcttgataaagttttggtttgtaaa |
25741564 |
T |
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| Q |
112 |
ggtgagaagaacaatgattctggtaagctaaatgttcctttgaattctggttcagttttttcaggtcttgctttaggaaaaaatttcacttgtggtatta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741563 |
ggtgagaagaacaatgattctggtaagctaaatgttcctttgaattctggttcagttttttcaggtcttgctttaggaaaaaatttcacttgtggtatta |
25741464 |
T |
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| Q |
212 |
gaaaaaagaatggatttgttctatgttggggtggtttatttgatagtggtggtgtgaataatcatgtgatgatgaaaagtgtttcttttgagtcaattgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741463 |
gaaaaaagaatggatttgttctatgttggggtggtttatttgatagtggtggtgtgaataatcatgtgatgatgaaaagtgtttcttttgagtcaattgt |
25741364 |
T |
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| Q |
312 |
tgctggtttggattttgtttgtggtttgagtattaaaaatttgtctcttatttgttggggtaatactaatgag |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741363 |
tgctggtttggattttgtttgtggtttgagtattaaaaatttgtctcttatttgttggggtaatactaatgag |
25741291 |
T |
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