View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_19 (Length: 367)
Name: NF12001_low_19
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 4632644 - 4632318
Alignment:
| Q |
20 |
gcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggtt |
119 |
Q |
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| T |
4632644 |
gcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcata--caaataatgctgggaaaaaattacaagaaacaggtt |
4632547 |
T |
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| Q |
120 |
caactttcttgagtggattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632546 |
caactttcttgagtggattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcatt |
4632447 |
T |
|
| Q |
220 |
ctctcaaaattccatttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcagattattttttatccatttat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632446 |
ctctcaaaattccatttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcagattattttttatccatttat |
4632347 |
T |
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| Q |
320 |
gtttttgaggtttctaaatatggttgttt |
348 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4632346 |
gtttttgaggtttctaaatatggttgttt |
4632318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 32443847 - 32443796
Alignment:
| Q |
297 |
cagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
348 |
Q |
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| T |
32443847 |
cagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
32443796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 27590758 - 27590643
Alignment:
| Q |
20 |
gcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggtt |
119 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||| || |
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| T |
27590758 |
gcattgtatgttttctgcaatatgcagagaaatcagtggattt--ctttgatcttactcatatacaaataatgctcgaaaaaaattacatgaaacatgtc |
27590661 |
T |
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| Q |
120 |
caactttcttgagtggat |
137 |
Q |
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| T |
27590660 |
caactttcttgagtggat |
27590643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 14956375 - 14956312
Alignment:
| Q |
285 |
ttttagttgcatcagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
348 |
Q |
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|||||||||||||| ||| ||||| ||| | ||||||||||||||||||||| || |||||||| |
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| T |
14956375 |
ttttagttgcatcaaattttttttaatcaacttatgtttttgaggtttctaattagggttgttt |
14956312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 52301798 - 52301830
Alignment:
| Q |
316 |
ttatgtttttgaggtttctaaatatggttgttt |
348 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
52301798 |
ttatgtttttgaggtttctaattatggttgttt |
52301830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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