View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12001_low_2 (Length: 750)
Name: NF12001_low_2
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 683; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 18 - 731
Target Start/End: Complemental strand, 4633029 - 4632318
Alignment:
| Q |
18 |
aaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcagaacatatatgacatagagaagttgattgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4633029 |
aaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcggaacatatatgacatagagaagttgattgg |
4632930 |
T |
|
| Q |
118 |
ctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaag |
217 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632929 |
ctgaaatatcttccacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaag |
4632830 |
T |
|
| Q |
218 |
tttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagccttaaagagattcaacttgatgcatttgtaacatgttatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632829 |
tttccttattatttgataatggatttgagaacctgcctgagcctttttgactcttatagccttaaagagattcaacttgatgcatttgtaacatgttatt |
4632730 |
T |
|
| Q |
318 |
tatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaaataaagatgcattatatattttc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4632729 |
tatgttataattcttatctcatttttgtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaaagaaagtaaagatgcattatatattttc |
4632630 |
T |
|
| Q |
418 |
tgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632629 |
tgcaatatgcagagaaatcagtggatttaactttgatcttactc--atacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtg |
4632532 |
T |
|
| Q |
518 |
gattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcattctctcaaaattccat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632531 |
gattctcgcaatgatcaattttatttactacctcttagtttgaaaacaaagcttcttctccccccactaactatagcatctcattctctcaaaattccat |
4632432 |
T |
|
| Q |
618 |
ttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcagattattttttatccatttatgtttttgaggtttct |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632431 |
ttttgaatccattcccaactatctcacatgtgacttctttatgagcagtattttagttgcatcagattattttttatccatttatgtttttgaggtttct |
4632332 |
T |
|
| Q |
718 |
aaatatggttgttt |
731 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4632331 |
aaatatggttgttt |
4632318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 680 - 731
Target Start/End: Complemental strand, 32443847 - 32443796
Alignment:
| Q |
680 |
cagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
731 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32443847 |
cagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
32443796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 192 - 520
Target Start/End: Complemental strand, 27590971 - 27590643
Alignment:
| Q |
192 |
tagtgatgacgacaaatgtgatcaagtttccttattatttgataatggatttgagaacctgcctgagccttttcgactcttatagcct-taaagagattc |
290 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
27590971 |
tagtggtgacgacaaatgtgatcaaggctccttattatttgataatggatttgagaacctgcctgagccttttggactcttatagcctctaaagagattc |
27590872 |
T |
|
| Q |
291 |
aacttgatgcatttgtaacatgttatttatgttataattcttatctcattttt-gtgtgaaaggatgaaatatttcaatttataaagctccaaatagcaa |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||| |||| |
|
|
| T |
27590871 |
aacttgatgcatttgtaacatgttatttatgttgtaattcttatctcattttttgtgtgaaaggatgagatatttcaactcataaagctccaaatggcaa |
27590772 |
T |
|
| Q |
390 |
agaaaataaagatgcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttactcatatacaaataatgctgggaaaaaatta |
489 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
27590771 |
agaaagtaaagacgcattgtatgttttctgcaatatgcagagaaatcagtggattt--ctttgatcttactcatatacaaataatgctcgaaaaaaatta |
27590674 |
T |
|
| Q |
490 |
caagaaacaggttcaactttcttgagtggat |
520 |
Q |
| |
|
|| |||||| || |||||||||||||||||| |
|
|
| T |
27590673 |
catgaaacatgtccaactttcttgagtggat |
27590643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 10168994 - 10169076
Alignment:
| Q |
91 |
catatatgacatagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
10168994 |
catatatgacatagagaagttgattggctgcaatatcttctaattttccttatttgtttttttgaataatatttttgttgtat |
10169076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 731
Target Start/End: Complemental strand, 14956375 - 14956312
Alignment:
| Q |
668 |
ttttagttgcatcagattattttttatccatttatgtttttgaggtttctaaatatggttgttt |
731 |
Q |
| |
|
|||||||||||||| ||| ||||| ||| | ||||||||||||||||||||| || |||||||| |
|
|
| T |
14956375 |
ttttagttgcatcaaattttttttaatcaacttatgtttttgaggtttctaattagggttgttt |
14956312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University