View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12001_low_22 (Length: 356)

Name: NF12001_low_22
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12001_low_22
NF12001_low_22
[»] chr7 (1 HSPs)
chr7 (1-338)||(449867-450196)
[»] chr3 (13 HSPs)
chr3 (11-178)||(9329877-9330041)
chr3 (25-165)||(9395314-9395454)
chr3 (11-101)||(9336581-9336671)
chr3 (24-87)||(9695615-9695678)
chr3 (11-86)||(41980895-41980970)
chr3 (11-86)||(41985669-41985744)
chr3 (40-88)||(9756450-9756498)
chr3 (47-86)||(9485969-9486008)
chr3 (47-86)||(13864281-13864320)
chr3 (11-86)||(9343886-9343961)
chr3 (40-86)||(9686753-9686799)
chr3 (29-94)||(16011695-16011760)
chr3 (39-87)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (11-94)||(7025797-7025880)
chr6 (11-87)||(7012861-7012937)
chr6 (11-95)||(7041537-7041621)
chr6 (11-94)||(7029854-7029937)
chr6 (11-86)||(7046880-7046955)
chr6 (11-95)||(9170858-9170942)
chr6 (11-95)||(9159486-9159570)
[»] chr5 (1 HSPs)
chr5 (22-89)||(18571163-18571230)
[»] chr8 (1 HSPs)
chr8 (29-86)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 450196 - 449867
Alignment:
Q  1 cagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaaca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  450196 cagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagt---- 450101  T
Q  101 cggtcaccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccaccataccacgggtcagcctgagcca 200  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450100 ----caccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccaccataccacgggtcagcctgagcca 450005  T
Q  201 tcaaatgaatgctcatgtctggtccaatcatcacagtccgattggtactgtctaccacacaaggccttcctttaaaagcacagttcatgactttacaagg 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450004 tcaaatgaatgctcatgtctggtccaatcatcacagtctgattggtactgtctaccacacaaggccttcctttaaaagcacagttcatgactttacaagg 449905  T
Q  301 ggttggcatgttggggatcgtcgtcaaatggtcgtccc 338  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  449904 ggttgacatgttggggatcgtcgtcaaatggtcgtccc 449867  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 9329877 - 9330041
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgt 110  Q
    ||||||||||   ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| | |   |    
T  9329877 aagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacgataa---t 9329973  T
Q  111 ttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctcccacca 178  Q
    ||  ||| | |  ||| ||||||||||  |||||||||||| | ||||||||||| ||| ||||||||    
T  9329974 tttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttacttttcccacca 9330041  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 9395314 - 9395454
Alignment:
Q  25 atctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatc 124  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| | ||| ||||   |  |    
T  9395314 atctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatcc 9395413  T
Q  125 actagcaacaactggaactcactactcgccaccaagaattt 165  Q
    |||||||||||||| || |||||| || | |||||||||||    
T  9395414 actagcaacaactgaaagtcactagtctcgaccaagaattt 9395454  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 9336581 - 9336671
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacac 101  Q
    ||||||||||   |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9336581 aagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac 9336671  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 9695678 - 9695615
Alignment:
Q  24 tatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 87  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  9695678 tatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaat 9695615  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 41980895 - 41980970
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    |||||||||| | |||| |||||| |||||||||||||||| || ||||| |||| | ||||||||||||||||||    
T  41980895 aagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 41985669 - 41985744
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    |||||||||| | |||| |||||| ||| |||||||||||| || ||||||||||||||||| || ||||||||||    
T  41985669 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 41985744  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 9756450 - 9756498
Alignment:
Q  40 caacttgacccactttttctccttctcatcaagcctaaacacatcaatc 88  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9756450 caacttgacccaccttttctctttctcatcaagcctatacacatcaatc 9756498  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 9486008 - 9485969
Alignment:
Q  47 acccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9486008 acccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 13864281 - 13864320
Alignment:
Q  47 acccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13864281 acccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 9343886 - 9343961
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    ||||||||||   |||| |||||| | || ||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  9343886 aagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 9686753 - 9686799
Alignment:
Q  40 caacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    ||||||||||||||| ||||| |||||||||||||| || |||||||    
T  9686753 caacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 16011760 - 16011695
Alignment:
Q  29 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 94  Q
    |||||||| | ||| || ||||| || |||||||||||||| |||| |||||||||||||| ||||    
T  16011760 cctaaattaggcaatttaacccaattcttctccttctcatcgagcccaaacacatcaatccttaca 16011695  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9613964 - 9613916
Alignment:
Q  39 tcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 87  Q
    ||||||| |||||||| |||||||||||||||||| |||| | ||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaat 9613916  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 7025797 - 7025880
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 94  Q
    ||||||||||   ||||||||||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7025797 aagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 7012861 - 7012937
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 87  Q
    |||||||||||  ||||||||||| | |||||||| |||||||| ||||||||||||| |||| |||||| ||||||    
T  7012861 aagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaat 7012937  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 7041537 - 7041621
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 95  Q
    ||||||||||   |||| |||||| | |||||||| |||||||| ||||||||||||| |||  |||||| ||||||||||||||    
T  7041537 aagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 94  Q
    ||||||||||   |||| || ||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 7046880 - 7046955
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    |||||||||| | |||| |||||| |||| ||||| |||||||| ||||||||||||| |||| |||||| |||||    
T  7046880 aagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 9170858 - 9170942
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 95  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||||| |||| |||||| |||||||| |||||    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacag 9170942  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 9159570 - 9159486
Alignment:
Q  11 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 95  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||| | |||| |||||| |||||||| |||||    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacag 9159486  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 18571163 - 18571230
Alignment:
Q  22 tgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatcc 89  Q
    |||||| |||||| ||||||| || |||||||| |||||||||||||||||| |||| | ||||||||    
T  18571163 tgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatcc 18571230  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 13170741 - 13170684
Alignment:
Q  29 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 86  Q
    |||||| ||| |||||||||||| || |||||||| |||||||| || ||||||||||    
T  13170741 cctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaa 13170684  T

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