View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_23 (Length: 355)
Name: NF12001_low_23
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 8719554 - 8719213
Alignment:
| Q |
1 |
catgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719554 |
catgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggagga |
8719455 |
T |
|
| Q |
101 |
agagtttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtaccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719454 |
agagtttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtaccttt |
8719355 |
T |
|
| Q |
201 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719354 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatgct |
8719255 |
T |
|
| Q |
301 |
ctttacctaaatttacgtttagaagtacacatatcttgtgat |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719254 |
ctttacctaaatttacgtttagaagtacacatatcttgtgat |
8719213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 8673261 - 8672929
Alignment:
| Q |
1 |
catgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggagga |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8673261 |
catgtttgagtctcactaacttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatga |
8673162 |
T |
|
| Q |
101 |
agagtttggttagcacatagcatttcaaactttctagattaatt----catcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtac |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
8673161 |
agagtttggttagcacatagcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtac |
8673062 |
T |
|
| Q |
197 |
ctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataa |
296 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8673061 |
cttggacttttgagcagaagcttggtgaagcactatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgaaacatctcttatcatataa |
8672962 |
T |
|
| Q |
297 |
tgctctttacctaaatttacgtttagaagtaca |
329 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||||| |
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|
| T |
8672961 |
tcctctttacctaaatttaagtttaaaagtaca |
8672929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 8591714 - 8591403
Alignment:
| Q |
5 |
tttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagag |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
8591714 |
tttgagtctcactaacttctttgttgcttaggttattcatcctattcatgaccaatgtttttatttgacttttgaccataagaagaagctggagaaagaa |
8591615 |
T |
|
| Q |
105 |
tttggttagcacatagcatttcaaactttctagattaattcatcatgtgattcattatttacaagaatctt-aatcaattacaggtgtagtacctttgac |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
8591614 |
tttggttagcacgtagcatttcaaactttctagcttaatgcatcatacaattagttatttacatgaatctttaatcaattacaggtgtagtacctttgac |
8591515 |
T |
|
| Q |
204 |
ttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatgctctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8591514 |
ttttgagcagaaacttggtgaagcagtatttatacttgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataattctctt |
8591415 |
T |
|
| Q |
304 |
tacctaaattta |
315 |
Q |
| |
|
|| |||||||| |
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|
| T |
8591414 |
gacttaaattta |
8591403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 23439633 - 23439930
Alignment:
| Q |
1 |
catgtttgagtctcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
23439633 |
catgtttgagtctcactaacttcttttttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaag---ctgaagga |
23439729 |
T |
|
| Q |
101 |
agagtttggttagcacatagcatttcaaactttctagattaatt----catcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| | |
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|
| T |
23439730 |
agagtttggttagcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagttc |
23439829 |
T |
|
| Q |
197 |
ctttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataa |
296 |
Q |
| |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
23439830 |
cttggacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgtaacatctcttatcatataa |
23439929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 55410343 - 55410251
Alignment:
| Q |
21 |
ttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttag |
113 |
Q |
| |
|
||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| || |||| |||||||||||| |
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|
| T |
55410343 |
ttctttgttggttaggttgtacatccaattcatgaccaatgtttttatttgactttggagcacaagaataagttgaaggaggagtttggttag |
55410251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 55410164 - 55410078
Alignment:
| Q |
201 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctctt |
287 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||| ||||||| |
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| T |
55410164 |
gacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagtcaggaatcttaaggtaaaatatctctt |
55410078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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