View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_26 (Length: 281)
Name: NF12001_low_26
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5467179 - 5466915
Alignment:
| Q |
1 |
gcaagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtcca |
100 |
Q |
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| T |
5467179 |
gcaagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtcca |
5467080 |
T |
|
| Q |
101 |
tgttaagatattgaagcgaacacaaggtgtagagccagcttatgtctctgacccaaagtcccgtagtgagcgagcctatgtctgaaagtgtccagcttat |
200 |
Q |
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| T |
5467079 |
tgttaagatattgaagcgaagacaaggtatagagccagcttatgtctctgacccaaagtcccgtagtgagcaagcctatgtctgaaagtgtccagcttat |
5466980 |
T |
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| Q |
201 |
acttgggccagagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattc |
265 |
Q |
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| T |
5466979 |
acttgggccagagacatcaagatgatgcaaatttgacaaatttccgagatgaggagggaccattc |
5466915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 5484751 - 5484632
Alignment:
| Q |
1 |
gcaagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtcca |
100 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||| |||| |||||||| ||||| |||| |
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| T |
5484751 |
gcaagattgcaagaggacaaatgcaactctaatagagatgacatcttattcacagctcgaaacaactcatggggcgagttggtgatgttgacaaaatcca |
5484652 |
T |
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| Q |
101 |
tgttaagatattgaagcgaa |
120 |
Q |
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| T |
5484651 |
tgccaagatagtgaagcgaa |
5484632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 5500753 - 5500634
Alignment:
| Q |
1 |
gcaagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtcca |
100 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||| |||||||| | ||| |||| |
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| T |
5500753 |
gcaagactgcaaaaggacaaatgcaactctaatagagatgacatcttattcacagctcgaaacaactcacgggacgagttggtgatgttgataaaatcca |
5500654 |
T |
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| Q |
101 |
tgttaagatattgaagcgaa |
120 |
Q |
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| T |
5500653 |
tgccaagatattgaagcgaa |
5500634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 5481874 - 5481729
Alignment:
| Q |
14 |
aggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtccatgttaagatattg |
113 |
Q |
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||||||| ||||||||||||| ||| | ||||||||| |||| |||||||||||| |||| |||| | | || |||| |||||| ||||||||| |
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| T |
5481874 |
aggacaagtgcaactctaacatagaagacatcttattcacagatcgaaacaactcgtggggcgagttgataaatttggcaaaatccatgccaagatattg |
5481775 |
T |
|
| Q |
114 |
aagcgaacacaaggtgtagagccagcttatgtctctgacccaaagt |
159 |
Q |
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| T |
5481774 |
aagcgaagacagagtagagagccaacttaagtctctgacccaaagt |
5481729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5476797 - 5476749
Alignment:
| Q |
18 |
caaatgcaactctaacagagatggcatcttattaacagctcgaaacaac |
66 |
Q |
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||||||||||||||||||||| | |||||| || ||||||||||||||| |
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| T |
5476797 |
caaatgcaactctaacagagaagacatctttttcacagctcgaaacaac |
5476749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 5489935 - 5489817
Alignment:
| Q |
2 |
caagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaaacaactcacggggtgagtctgtgatgttaacaaagtccat |
101 |
Q |
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||||||||||| | | ||||||||| ||||||| | ||| ||||||||| ||| || | ||||||||| | || |||| || ||||| ||||| | ||| |
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| T |
5489935 |
caagattgcaagaagccaaatgcaattctaacaaatatgacatcttattcacaacttggaacaactcatgtggcgagttggtaatgtttacaaaattcat |
5489836 |
T |
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| Q |
102 |
gttaagatattgaagcgaa |
120 |
Q |
| |
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|| ||||||| |||||||| |
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| T |
5489835 |
gtcaagatatcgaagcgaa |
5489817 |
T |
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