View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_27 (Length: 277)
Name: NF12001_low_27
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 11980021 - 11980267
Alignment:
| Q |
18 |
aaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctttcgcgctgtatgtcagcaatggaataacttgata |
117 |
Q |
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| T |
11980021 |
aaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgcttccgcgctgtatgtcagcaatggaataacttgata |
11980120 |
T |
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| Q |
118 |
agctcacagcgtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggagattatgattatgaagccatgtatgacc |
217 |
Q |
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| T |
11980121 |
agctcacagagtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggagattatgattatgaagccatgtatgacc |
11980220 |
T |
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| Q |
218 |
cttatatgaaaagatggtattatcctaatacacttgacttctctgct |
264 |
Q |
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| T |
11980221 |
cttatatgaaaagatggtattatcctaatacacttgaattctctgct |
11980267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 11953839 - 11954059
Alignment:
| Q |
25 |
cctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctttcgcgctgtatgtcagcaatggaataacttgataagctcac |
124 |
Q |
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| T |
11953839 |
cctgaagatctatttgaggttgtgcttgcacgacttcccatggccaaaattatatgtttccgtactgtatgccagcaatggaataatttgataacctctc |
11953938 |
T |
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| Q |
125 |
agcgtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggagattatgattatgaagccatgtatgacccttatat |
224 |
Q |
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| T |
11953939 |
aaagtttttctcagcaatgttctaaagtctcacaagtaaatccatggttttgcatatctcatggacattacaattacaaaaccatttatgacccatgtat |
11954038 |
T |
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| Q |
225 |
gaaaagatggtattatcctaa |
245 |
Q |
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| T |
11954039 |
gaaaagatggtataatcctaa |
11954059 |
T |
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