View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_28 (Length: 269)
Name: NF12001_low_28
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 10121702 - 10121465
Alignment:
| Q |
14 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121702 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
10121603 |
T |
|
| Q |
114 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121602 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
10121503 |
T |
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| Q |
214 |
acttttttgtctgacccttcttctgcttcatatccact |
251 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
10121502 |
acttttttgtctgacccttcttctgtttcatatccact |
10121465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 30628375 - 30628612
Alignment:
| Q |
14 |
caaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatttcctgc |
113 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||| ||| ||| |
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| T |
30628375 |
caaatgcagctagcaagtccacatcatagcaacctgaatcccaacatgttttgtacacagcaattctagccataggtgcacctccccttgcacctccact |
30628474 |
T |
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| Q |
114 |
tgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagag |
213 |
Q |
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||||| || ||||||||||||||| || |||| ||||| ||| | |||||||||||||| |||||||| | |||||| || || |||||||| ||| |
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| T |
30628475 |
tgctagtcctttataattcatgttttgtacatatctccctgcagctattgaagctgtatggctaccatgacctgtgctgtccctagctgatctgaatgag |
30628574 |
T |
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| Q |
214 |
acttttttgtctgacccttcttctgcttcatatccact |
251 |
Q |
| |
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| |||| | |||| |||| ||||||||||||||||| |
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| T |
30628575 |
atttttgcatttgactcttcctctgcttcatatccact |
30628612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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