View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12001_low_30 (Length: 266)

Name: NF12001_low_30
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12001_low_30
NF12001_low_30
[»] chr6 (54 HSPs)
chr6 (15-252)||(26802201-26802441)
chr6 (16-252)||(27725033-27725267)
chr6 (15-252)||(27228997-27229231)
chr6 (26-252)||(27698682-27698906)
chr6 (15-252)||(27718567-27718803)
chr6 (15-252)||(28786041-28786277)
chr6 (15-252)||(27604893-27605135)
chr6 (15-252)||(26655752-26655988)
chr6 (15-252)||(26761723-26761959)
chr6 (35-252)||(27611190-27611406)
chr6 (15-252)||(28780902-28781138)
chr6 (37-252)||(28792184-28792398)
chr6 (75-248)||(27338257-27338430)
chr6 (75-248)||(27398997-27399170)
chr6 (135-252)||(27531385-27531502)
chr6 (83-245)||(26622806-26622968)
chr6 (83-245)||(26728784-26728946)
chr6 (115-245)||(26884025-26884155)
chr6 (20-251)||(27427792-27428020)
chr6 (89-245)||(31284124-31284280)
chr6 (89-250)||(27593210-27593371)
chr6 (15-245)||(26823609-26823832)
chr6 (91-245)||(26861454-26861608)
chr6 (89-243)||(27678782-27678936)
chr6 (89-242)||(27677812-27677965)
chr6 (108-245)||(26646334-26646471)
chr6 (108-245)||(26752302-26752439)
chr6 (89-242)||(27706600-27706753)
chr6 (107-213)||(28098596-28098702)
chr6 (147-252)||(25481636-25481741)
chr6 (147-252)||(25579613-25579718)
chr6 (147-252)||(26048739-26048844)
chr6 (147-252)||(26055820-26055925)
chr6 (147-252)||(26069908-26070013)
chr6 (147-252)||(26075790-26075895)
chr6 (147-252)||(26142759-26142864)
chr6 (147-252)||(25538434-25538539)
chr6 (130-247)||(28234441-28234558)
chr6 (115-248)||(28325343-28325476)
chr6 (117-203)||(26342171-26342257)
chr6 (109-247)||(28185222-28185360)
chr6 (148-248)||(25071554-25071654)
chr6 (148-248)||(27214312-27214412)
chr6 (148-248)||(27234816-27234916)
chr6 (15-47)||(27338450-27338482)
chr6 (15-47)||(27399190-27399222)
chr6 (148-248)||(27665309-27665409)
chr6 (118-205)||(28226815-28226902)
chr6 (109-247)||(28180970-28181108)
chr6 (148-248)||(26635585-26635685)
chr6 (148-248)||(26741551-26741651)
chr6 (148-248)||(26848555-26848655)
chr6 (151-247)||(28242702-28242798)
chr6 (184-248)||(29825958-29826022)
[»] scaffold0349 (3 HSPs)
scaffold0349 (16-252)||(3610-3844)
scaffold0349 (26-252)||(14543-14767)
scaffold0349 (15-180)||(8061-8225)
[»] scaffold0277 (2 HSPs)
scaffold0277 (15-252)||(13820-14056)
scaffold0277 (15-252)||(4859-5100)
[»] scaffold1254 (1 HSPs)
scaffold1254 (15-252)||(105-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (15-252)||(7295-7524)
[»] chr4 (8 HSPs)
chr4 (17-246)||(18699581-18699807)
chr4 (15-246)||(18655658-18655886)
chr4 (15-246)||(18731685-18731913)
chr4 (15-246)||(18679748-18679976)
chr4 (83-246)||(18724266-18724429)
chr4 (20-251)||(17989226-17989454)
chr4 (20-251)||(18073535-18073763)
chr4 (157-247)||(5091147-5091237)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-251)||(59343-59571)
[»] chr8 (2 HSPs)
chr8 (89-245)||(29273965-29274121)
chr8 (129-242)||(31903727-31903840)
[»] chr1 (3 HSPs)
chr1 (69-245)||(28164544-28164720)
chr1 (115-245)||(28127862-28127992)
chr1 (89-245)||(268539-268695)
[»] scaffold0019 (1 HSPs)
scaffold0019 (115-247)||(58475-58607)
[»] scaffold0038 (4 HSPs)
scaffold0038 (130-247)||(34602-34719)
scaffold0038 (115-248)||(116658-116791)
scaffold0038 (118-205)||(27313-27400)
scaffold0038 (151-247)||(42864-42960)
[»] chr2 (2 HSPs)
chr2 (127-203)||(3279562-3279638)
chr2 (91-248)||(17993876-17994033)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 54)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 26802201 - 26802441
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnn---catccaatttctcacaattttcatggctatgcagtctccttcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttcc 26802300  T
Q  112 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802301 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 26802400  T
Q  212 ttattgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26802401 ttattgacaagggaatccataccttcattgatgacaatgat 26802441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 27725267 - 27725033
Alignment:
Q  16 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 115  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  27725267 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 27725170  T
Q  116 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 215  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  27725169 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 27725070  T
Q  216 tgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  27725069 tgacaagggaatccataccttcattgatgacaatgat 27725033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 27228997 - 27229231
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||       ||||||||||||| ||| | |||||||||| || || ||||||||     
T  27228997 cacataccacaaaaacatactcattcatattctgcattctaaaactctttt---catccaatttctctcaagtctcatggctatacaatcaccttcctct 27229093  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27229094 tcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctctta 27229193  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     |||||||||||||||||||||||||||||||||||||    
T  27229194 ctgacaagggaatccataccttcattgatgacaatgat 27229231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 27698906 - 27698682
Alignment:
Q  26 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 125  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  27698906 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 27698809  T
Q  126 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 225  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  27698808 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 27698709  T
Q  226 atccataccttcattgatgacaatgat 252  Q
    |||||||||||||||||||||||||||    
T  27698708 atccataccttcattgatgacaatgat 27698682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 27718803 - 27718567
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 27718705  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||||    
T  27718704 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctctta 27718605  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     |||||||||||||||||||||||||||||||||||||    
T  27718604 ctgacaagggaatccataccttcattgatgacaatgat 27718567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 28786041 - 28786277
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || |||||||||    
T  28786041 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctca 28786139  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||    
T  28786140 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 28786239  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     ||||||||||||| | |||||||||||||||||||||    
T  28786240 ctgacaagggaatcaaaaccttcattgatgacaatgat 28786277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 27605135 - 27604893
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||||||||||||| |  |||||||||    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactctttttt-catccaatttctctcaattctcatggctatgcaattaccttcctca 27605037  T
Q  115 tcctc------ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 208  Q
    |||||      ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27605036 tcctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaagg 27604937  T
Q  209 ctcttattgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||    
T  27604936 ctcttactgacaagggaattcataccttcattgatgaaaatgat 27604893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 26655752 - 26655988
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26655850  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26655851 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26655950  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  26655951 ttgataagggaatccatactttcattgatgacaatgat 26655988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 26761723 - 26761959
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26761821  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26761822 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26761921  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  26761922 ttgataagggaatccatactttcattgatgacaatgat 26761959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 27611406 - 27611190
Alignment:
Q  35 tcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatgg 134  Q
    |||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||| |   ||||||| || ||||||||||| |||||    
T  27611406 tcattcatattctgcattctcaaactctttttt-catccaatttctctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatgg 27611308  T
Q  135 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  27611307 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccatacc 27611208  T
Q  235 ttcattgatgacaatgat 252  Q
    ||||||||||||||||||    
T  27611207 ttcattgatgacaatgat 27611190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 28780902 - 28781138
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  28780902 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 28781000  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  28781001 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 28781100  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     ||||||||||||| | |||||||||||||||||||||    
T  28781101 ctgacaagggaatcaaaaccttcattgatgacaatgat 28781138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 28792184 - 28792398
Alignment:
Q  37 attcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggat 136  Q
    |||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||||||||||||||||||||| |||||||    
T  28792184 attcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggat 28792282  T
Q  137 tcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacctt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| | |||||    
T  28792283 tcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaacctt 28792382  T
Q  237 cattgatgacaatgat 252  Q
    ||||||||||||||||    
T  28792383 cattgatgacaatgat 28792398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 27338430 - 27338257
Alignment:
Q  75 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 174  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27338430 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27338331  T
Q  175 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaa 248  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27338330 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaa 27338257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 27399170 - 27398997
Alignment:
Q  75 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 174  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27399170 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27399071  T
Q  175 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaa 248  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  27399070 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaa 27398997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 27531502 - 27531385
Alignment:
Q  135 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 234  Q
    |||||||||||||||||||||||||||||||||| | ||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  27531502 attcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatacc 27531403  T
Q  235 ttcattgatgacaatgat 252  Q
    ||||||||||||||||||    
T  27531402 ttcattgatgacaatgat 27531385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 26622806 - 26622968
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26622806 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26622905  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  26622906 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 26728784 - 26728946
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26728784 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26728883  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  26728884 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26728946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 26884025 - 26884155
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||||| ||||| || || |||||||||||||||||||    
T  26884025 tcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctctta 26884124  T
Q  215 ttgacaagggaatccataccttcattgatga 245  Q
     | ||||||||||||| ||||||||||||||    
T  26884125 ctaacaagggaatccacaccttcattgatga 26884155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 27428020 - 27427792
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  27428020 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 27427924  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  27427923 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 27427824  T
Q  220 aagggaatccataccttcattgatgacaatga 251  Q
    |||||||| | |||||||  ||||||| ||||    
T  27427823 aagggaattcgtaccttccatgatgacgatga 27427792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 245
Target Start/End: Original strand, 31284124 - 31284280
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| ||  ||||||| ||||||||| |||| |||| |||||  |||||||| ||||| ||||| ||||| | |||||||||||| |||||    
T  31284124 tcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggttt 31284223  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
     || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31284224 caccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 31284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 27593371 - 27593210
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27593371 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27593272  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatg 250  Q
     || |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  27593271 caccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatg 27593210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 26823609 - 26823832
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||       | ||||||||||| ||||| ||||||||||||||||  |||||||     
T  26823609 cacacaccacagtaacatactcattcatattctgcattctcaaactctttctt-cgtccaatttctctcaattctcatggctatgcagtcaacttcctc- 26823706  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
         |||| |||| ||||  ||||  ||||||||||| ||||||||||| ||| ||||||||||||| |  ||||| ||||||||||||||||||||||    
T  26823707 -----ttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctctta 26823801  T
Q  215 ttgacaagggaatccataccttcattgatga 245  Q
      |||||||||||||| |||||  |||||||    
T  26823802 cagacaagggaatccacaccttttttgatga 26823832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 26861454 - 26861608
Alignment:
Q  91 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 190  Q
    ||||||||||| || |||| ||| ||||||||  |||| ||||||||||  ||||| || ||||||||||| || || | |||||||||||| |||||||    
T  26861454 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggtttta 26861553  T
Q  191 cgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    | || ||||||||||||||||||| |||||||||||| || |||||||| |||||    
T  26861554 ccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatga 26861608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 27678782 - 27678936
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27678782 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27678881  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgat 243  Q
     || || ||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  27678882 caccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgat 27678936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 27677965 - 27677812
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||| ||| || || | ||||||||||||||||||    
T  27677965 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacggttt 27677866  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattga 242  Q
     || |||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  27677865 caccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattga 27677812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 26646334 - 26646471
Alignment:
Q  108 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 207  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26646334 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26646433  T
Q  208 gctcttattgacaagggaatccataccttcattgatga 245  Q
    ||||||| |||||||||||| || ||||||||||||||    
T  26646434 gctcttactgacaagggaattcacaccttcattgatga 26646471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 26752302 - 26752439
Alignment:
Q  108 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 207  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26752302 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26752401  T
Q  208 gctcttattgacaagggaatccataccttcattgatga 245  Q
    ||||||| |||||||||||| || ||||||||||||||    
T  26752402 gctcttactgacaagggaattcacaccttcattgatga 26752439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 27706753 - 27706600
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||| ||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || ||   ||||||||||||||||||    
T  27706753 tcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggttt 27706654  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattga 242  Q
     || |||||||||||||||||| ||  ||||||||||||||| |||||||||||    
T  27706653 cacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattga 27706600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 28098702 - 28098596
Alignment:
Q  107 cttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 206  Q
    ||||||| | ||||||||| |||||||||||||| ||  | ||||| || | |||||||||||| ||||||||||| |||||||| || |||||||||||    
T  28098702 cttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaa 28098603  T
Q  207 ggctctt 213  Q
     ||||||    
T  28098602 agctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 25481636 - 25481741
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| |||||||||||     
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  247 aatgat 252  Q
    ||||||    
T  25481736 aatgat 25481741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 25579613 - 25579718
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||||||| || |||| |||||||||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||||||| |||||||     
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  247 aatgat 252  Q
    ||||||    
T  25579713 aatgat 25579718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 26048739 - 26048844
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| |||||||||||     
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  247 aatgat 252  Q
    ||||||    
T  26048839 aatgat 26048844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 26055820 - 26055925
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| |||||||||||     
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  247 aatgat 252  Q
    ||||||    
T  26055920 aatgat 26055925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 26069908 - 26070013
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| |||||||||||     
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  247 aatgat 252  Q
    ||||||    
T  26070008 aatgat 26070013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 26075790 - 26075895
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| |||||||||||     
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  247 aatgat 252  Q
    ||||||    
T  26075890 aatgat 26075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 26142759 - 26142864
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| ||||||||||||| | ||| |||||||||||     
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  247 aatgat 252  Q
    ||||||    
T  26142859 aatgat 26142864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 25538434 - 25538539
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| |||||||||||||   ||| ||||| |||||     
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgat 25538533  T
Q  247 aatgat 252  Q
    ||||||    
T  25538534 aatgat 25538539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 28234441 - 28234558
Alignment:
Q  130 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 229  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  28234441 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 28234540  T
Q  230 ataccttcattgatgaca 247  Q
    | ||||||||||||||||    
T  28234541 acaccttcattgatgaca 28234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 28325343 - 28325476
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||     
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 28325442  T
Q  215 ttgacaagggaatccataccttcattgatgacaa 248  Q
     |   ||| |||| | ||||||||||||||||||    
T  28325443 gtaggaagagaattcgtaccttcattgatgacaa 28325476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 26342257 - 26342171
Alignment:
Q  117 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctcta 203  Q
    ||||||||| || ||||||||||| ||  | |||||||||| ||||||||||| || |||||| || |||||||| |||||| ||||    
T  26342257 ctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatcta 26342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 28185222 - 28185360
Alignment:
Q  109 tcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 208  Q
    |||||||||||||| || || ||||||||||| ||  | |||||||| || ||||| || | ||||||||| ||  ||||||| || |||||| | |  |    
T  28185222 tcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagag 28185321  T
Q  209 ctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||  ||||||||||||||  |||||||| |||||||    
T  28185322 ctctttgtgacaagggaatccgaaccttcatggatgaca 28185360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 25071554 - 25071654
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| ||||| || |||||||| | ||||||||| || ||||| || || ||||||  |||||| |||||||| ||||| ||||||||||    
T  25071554 gtgttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgaca 25071653  T
Q  248 a 248  Q
    |    
T  25071654 a 25071654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 27214312 - 27214412
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| ||||| || ||||||||  ||||||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  27214312 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27214411  T
Q  248 a 248  Q
    |    
T  27214412 a 27214412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 27234916 - 27234816
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| ||||| || ||||||||  ||||||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  27234916 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27234817  T
Q  248 a 248  Q
    |    
T  27234816 a 27234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 27338482 - 27338450
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattct 47  Q
    |||||||||||||||||||||||||||||||||    
T  27338482 cacagaccacaaaaacttactcattcatattct 27338450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 27399222 - 27399190
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattct 47  Q
    |||||||||||||||||||||||||||||||||    
T  27399222 cacagaccacaaaaacttactcattcatattct 27399190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 27665409 - 27665309
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| ||||| || |||||||| |  ||||| || || || ||||| |||||||||  |||||| |||||||| ||||||||||||||||    
T  27665409 gtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgaca 27665310  T
Q  248 a 248  Q
    |    
T  27665309 a 27665309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 28226815 - 28226902
Alignment:
Q  118 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctaca 205  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||    
T  28226815 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 28226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 28180970 - 28181108
Alignment:
Q  109 tcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 208  Q
    |||||||||||||| || || ||||||||||| ||  | | |||||| || ||||| ||   ||||||||| || |||||||| || |||||| | |  |    
T  28180970 tcctcatcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagag 28181069  T
Q  209 ctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||  ||||||||||||||  |||||||| |||||||    
T  28181070 ctctttgtgacaagggaatccgaaccttcatggatgaca 28181108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 26635585 - 26635685
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| |||||||| |||||||  | |||||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||    
T  26635585 gtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 26635684  T
Q  248 a 248  Q
    |    
T  26635685 a 26635685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 26741551 - 26741651
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| |||||||| |||||||  | |||||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||    
T  26741551 gtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 26741650  T
Q  248 a 248  Q
    |    
T  26741651 a 26741651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 26848555 - 26848655
Alignment:
Q  148 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||| | ||||| |||||||| |||||| | | | |||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  26848555 gtgttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgaca 26848654  T
Q  248 a 248  Q
    |    
T  26848655 a 26848655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 28242702 - 28242798
Alignment:
Q  151 ttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    ||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||    
T  28242702 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 28242798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 29825958 - 29826022
Alignment:
Q  184 ggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaa 248  Q
    |||||||| |||||||||||||| ||||| | |||||||  ||| |  |||||||||||||||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaa 29826022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 3844 - 3610
Alignment:
Q  16 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 115  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  3844 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 3747  T
Q  116 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 215  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  3746 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 3647  T
Q  216 tgacaagggaatccataccttcattgatgacaatgat 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  3646 tgacaagggaatccataccttcattgatgacaatgat 3610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 14767 - 14543
Alignment:
Q  26 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 125  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  14767 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 14670  T
Q  126 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 225  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  14669 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 14570  T
Q  226 atccataccttcattgatgacaatgat 252  Q
    |||||||||||||||||||||||||||    
T  14569 atccataccttcattgatgacaatgat 14543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 8225 - 8061
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 8127  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 180  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8126 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 14056 - 13820
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  14056 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 13958  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  13957 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 13858  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     ||||||||||||| | |||||||||||||||||||||    
T  13857 ctgacaagggaatcaaaaccttcattgatgacaatgat 13820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 5100 - 4859
Alignment:
Q  15 cacagaccacaaaaacttactcatt-----catattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctcctt 109  Q
    ||||||||||||||||||| |||||     ||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||    
T  5100 cacagaccacaaaaacttattcattaaattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcacctt 5002  T
Q  110 cctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggc 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| || ||||||||||||||    
T  5001 cctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggc 4902  T
Q  210 tcttattgacaagggaatccataccttcattgatgacaatgat 252  Q
    ||||| ||||||||||||| | |||||||||||||||||||||    
T  4901 tcttactgacaagggaatcaaaaccttcattgatgacaatgat 4859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 334 - 105
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  334 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 243  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  242 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 143  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     ||||||||||||| | |||||||||||||||||||||    
T  142 ctgacaagggaatcaaaaccttcattgatgacaatgat 105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 7295 - 7524
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  7295 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 7386  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  7387 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 7486  T
Q  215 ttgacaagggaatccataccttcattgatgacaatgat 252  Q
     ||||||||||||| | |||||||||||||||||||||    
T  7487 ctgacaagggaatcaaaaccttcattgatgacaatgat 7524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 18699807 - 18699581
Alignment:
Q  17 cagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatc 116  Q
    |||||||||||||||||  |  |||||||||||||||||||||||       |||| | |||||| ||||| ||||||||||||| || |||||||||||    
T  18699807 cagaccacaaaaacttaacc--tcatattctgcattctcaaactctttttt-catctagtttctctcaattctcatggctatgcaatcaccttcctcatc 18699711  T
Q  117 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttatt 216  Q
    |||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||  |||||||||| ||| |||||||||| ||||||| |    
T  18699710 ctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttact 18699611  T
Q  217 gacaagggaatccataccttcattgatgac 246  Q
    |||||||||||||| |||||||||||||||    
T  18699610 gacaagggaatccacaccttcattgatgac 18699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 18655886 - 18655658
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| ||||||||||||||| ||| || |||||||||    
T  18655886 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcaattttcatggctaggcaatcaccttcctca 18655790  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  |||||||||| |||||||    
T  18655789 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctctta 18655690  T
Q  215 ttgacaagggaatccataccttcattgatgac 246  Q
     ||||||||||||||| |||||||||||||||    
T  18655689 ctgacaagggaatccacaccttcattgatgac 18655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 18731913 - 18731685
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18731913 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcgattttcatggctatgcaatcaccttcctca 18731817  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||| |||||||||  |||||||    
T  18731816 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctctta 18731717  T
Q  215 ttgacaagggaatccataccttcattgatgac 246  Q
     ||||||||||||||| |||||||||||||||    
T  18731716 ctgacaagggaatccacaccttcattgatgac 18731685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 18679976 - 18679748
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18679976 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctctattttcatggctatgcaatcaccttcctca 18679880  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    | |||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  ||||||||||||||||||    
T  18679879 ttctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctctta 18679780  T
Q  215 ttgacaagggaatccataccttcattgatgac 246  Q
     |||||| |||||||| |||||||||||||||    
T  18679779 ctgacaaaggaatccacaccttcattgatgac 18679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 18724429 - 18724266
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |    
T  18724429 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18724330  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 246  Q
    ||||||||| ||  |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  18724329 cggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgac 18724266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 17989454 - 17989226
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  17989454 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 17989358  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  17989357 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 17989258  T
Q  220 aagggaatccataccttcattgatgacaatga 251  Q
    |||||||| | |||||||  ||||||| ||||    
T  17989257 aagggaattcgtaccttccatgatgacgatga 17989226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 18073535 - 18073763
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  18073535 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 18073631  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  18073632 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 18073731  T
Q  220 aagggaatccataccttcattgatgacaatga 251  Q
    |||||||| | |||||||  ||||||| ||||    
T  18073732 aagggaattcgtaccttccatgatgacgatga 18073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 5091237 - 5091147
Alignment:
Q  157 agttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    |||||||| ||||| |||||||| ||||||||||| || ||||||||  | |||||   || ||||||||| || ||||||||||||||||    
T  5091237 agttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgaca 5091147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 59343 - 59571
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  59343 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 59439  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  59440 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 59539  T
Q  220 aagggaatccataccttcattgatgacaatga 251  Q
    |||||||| | |||||||  ||||||| ||||    
T  59540 aagggaattcgtaccttccatgatgacgatga 59571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 29274121 - 29273965
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||||||||||| || |||||||  ||||| |||  |||||||||  |||||||    
T  29274121 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttt 29274022  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    ||  ||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  29274021 tattggccatctctacaagactcttactgacaagggaatccacaccttcattgatga 29273965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 31903727 - 31903840
Alignment:
Q  129 ttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatc 228  Q
    |||||||||||| ||| | ||||||||||| ||||| |||   |||||||| || |||||||| || ||||||||||| ||||||  ||| |||||||||    
T  31903727 ttatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatc 31903826  T
Q  229 cataccttcattga 242  Q
    || ||||| |||||    
T  31903827 cacacctttattga 31903840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 245
Target Start/End: Complemental strand, 28164720 - 28164544
Alignment:
Q  69 catccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggc 168  Q
    ||||||||||||  ||||| |||||||||| |  || | |||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  28164720 catccaatttctgtcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggc 28164621  T
Q  169 actgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    | |||||||||  ||||||| || ||| ||||||| ||||| |||   ||||||||||| || || |||||||||||    
T  28164620 agtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatga 28164544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 28127992 - 28127862
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||  ||||||| || ||| ||||||||||||| |||     
T  28127992 tcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggcccttt 28127893  T
Q  215 ttgacaagggaatccataccttcattgatga 245  Q
     ||||||||||||||| || |||||||||||    
T  28127892 atgacaagggaatccacacattcattgatga 28127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 268695 - 268539
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||  | ||||| || |||||||  || || |||  |||||||||  | |||||    
T  268695 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggttt 268596  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatga 245  Q
    ||  ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  268595 tattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatga 268539  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 58607 - 58475
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||| || || ||||||||||| || || |||||||| || ||||| ||   ||||||||| || |||||||| || ||||||||||  ||||||     
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctcttt 58508  T
Q  215 ttgacaagggaatccataccttcattgatgaca 247  Q
     ||||||||||||||  |||||||| |||||||    
T  58507 gtgacaagggaatccgaaccttcatggatgaca 58475  T

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Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 34602 - 34719
Alignment:
Q  130 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 229  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  34602 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 34701  T
Q  230 ataccttcattgatgaca 247  Q
    | ||||||||||||||||    
T  34702 acaccttcattgatgaca 34719  T

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Target: scaffold0038; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 116658 - 116791
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||     
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 116757  T
Q  215 ttgacaagggaatccataccttcattgatgacaa 248  Q
     |   ||| |||| | ||||||||||||||||||    
T  116758 gtaggaagagaattcgtaccttcattgatgacaa 116791  T

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Target: scaffold0038; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 27313 - 27400
Alignment:
Q  118 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctaca 205  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||    
T  27313 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 27400  T

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Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 42864 - 42960
Alignment:
Q  151 ttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 247  Q
    ||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||    
T  42864 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 42960  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 3279562 - 3279638
Alignment:
Q  127 tcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctcta 203  Q
    |||||||||||||| ||  | || ||| | ||||||||||||||||||||||| || |||||||| || ||||||||    
T  3279562 tcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctcta 3279638  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 17994033 - 17993876
Alignment:
Q  91 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 190  Q
    ||||||||||| || |||||||| || || || || |||||||| ||||  | | | |||||| | ||||| ||||| || || ||||| || ||||| |    
T  17994033 atggctatgcaatcaccttcctcctcttcctccttatcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttca 17993934  T
Q  191 cgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaa 248  Q
    | || |||||||| || ||||||  |||||||||||| |  |||||||| ||||||||    
T  17993933 ccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaa 17993876  T

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