View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_31 (Length: 261)
Name: NF12001_low_31
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 28887670 - 28887432
Alignment:
| Q |
7 |
atgatatgacaggtatctcatagtaagataatatagttacaaactgattcatccaaccagcaagggagtagcaaaatagagggcgtgttgcacaagaaca |
106 |
Q |
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| T |
28887670 |
atgatatgacaggtatctcatagtaagataatatagttacaaactgattcatccaaccagcaagggagtagcaaaatagagggcgtgttgcacaagaaca |
28887571 |
T |
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| Q |
107 |
ttagagatcggacatacttcaaataatattgatatagaatgcttctttgtttgaaaatggcaaaatatcatattcatatcaagccatcgtataaaactaa |
206 |
Q |
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| T |
28887570 |
gtagagatcggacatacttcaaataatattgatatagaatgcttctttgtttgaaaatggcaaaatatcatattcatatcaagccatcgtataaaactaa |
28887471 |
T |
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| Q |
207 |
ggattgtattttgcataaacaattttagtgttcaacacc |
245 |
Q |
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| T |
28887470 |
ggattgtattttgcataaacaattttagtgttcaacacc |
28887432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 28883265 - 28883213
Alignment:
| Q |
188 |
agccatcgtataaaactaaggattgtattttgcataaacaattttagtgttca |
240 |
Q |
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| T |
28883265 |
agccattgtacaaaactaaggactgtattttgcgtaaacaattttagttttca |
28883213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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