View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12001_low_32 (Length: 258)
Name: NF12001_low_32
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20527690 - 20527928
Alignment:
| Q |
1 |
agtcttttatagttccctaaacaatttaatcctattaatgaacatctttgagtcaccaaactcaaagaagcttgtaaatggtgccaaattaataaaatga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20527690 |
agtcttttatagttccttaaacaatttcatcctattaatgaacatctttgagtcaccaaactcaaagaagcttgtaaatggtgccaaattaataaaatga |
20527789 |
T |
|
| Q |
101 |
aactttaatgattatatagtaactccgtcaattctaagagcacaaacaagtggattgaagagagttgaggcgtcttcaaagttcacacacgcaatcgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
20527790 |
aactttaatgattatatagtaactccgccaattctaagagcacaaacaagtggattgaagagagttgaggcctcttcaaagttcacacacgtaatcgata |
20527889 |
T |
|
| Q |
201 |
cgattaaacaacacacaaaaagaagtcgtatatgtctct |
239 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20527890 |
ccgttaaacaacacacaaaaagaagttgtatatgtctct |
20527928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University