View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12001_low_34 (Length: 253)

Name: NF12001_low_34
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12001_low_34
NF12001_low_34
[»] chr3 (2 HSPs)
chr3 (13-253)||(50967928-50968168)
chr3 (13-253)||(51071063-51071303)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 50968168 - 50967928
Alignment:
Q  13 acatcaataaaattaattgtaaaaaatatttgccgtaaatttcatatttacagctaaaacgagtaattgtataatgcatcaccacgtctaattcaaatcc 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50968168 acatcaataaaattaattgtaaaaaatatttgccgtaaatatcatatttacagctaaaacaagtaattgtataatgcatcaccacgtctaattcaaatcc 50968069  T
Q  113 aaaagaagatacacatggtaagaaagaggggaagaagatgacacaaatataggtgaatattcgtctttgcgacaaactaatcaatcggttaagatacacc 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  50968068 aaaagaagatatacatggtaagaaagaggggaagaagatgacacaaatataggtgaatatttgtctttacaacaaactaatcaatcggttaagatacacc 50967969  T
Q  213 tataacctaattcatagattatcttacctcgataaaaataa 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50967968 tataacctaattcatagattatcttacctcgataaaaataa 50967928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 51071303 - 51071063
Alignment:
Q  13 acatcaataaaattaattgtaaaaaatatttgccgtaaatttcatatttacagctaaaacgagtaattgtataatgcatcaccacgtctaattcaaatcc 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51071303 acatcaataaaattaattgtaaaaaatatttgccgtaaatatcatatttacagctaaaacaagtaattgtataatgcatcaccacgtctaattcaaatcc 51071204  T
Q  113 aaaagaagatacacatggtaagaaagaggggaagaagatgacacaaatataggtgaatattcgtctttgcgacaaactaatcaatcggttaagatacacc 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  51071203 aaaagaagatatacatggtaagaaagaggggaagaagatgacacaaatataggtgaatatttgtctttacaacaaactaatcaatcggttaagatacacc 51071104  T
Q  213 tataacctaattcatagattatcttacctcgataaaaataa 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51071103 tataacctaattcatagattatcttacctcgataaaaataa 51071063  T

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