View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_35 (Length: 251)
Name: NF12001_low_35
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 43865213 - 43864969
Alignment:
| Q |
8 |
tgagaagaagtggccaattgttagtaggaaaacacaacttgtgttgaatgctgttaagtcttcaattcataggggttttgagcctgttcagattgaggag |
107 |
Q |
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| T |
43865213 |
tgagaagaagtggccaattgttagtaggaaaacacaacttgtgttgaatgctgttaagtcttcaattcataggggttttgagcctgttcagattgaggag |
43865114 |
T |
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| Q |
108 |
tgaagcaaggagtatgttgtgtacttctcaatatgtactctgctcaattgatatctttggttttatctgttaaaatgttaatgcatttcaaat-aatatt |
206 |
Q |
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| T |
43865113 |
tgaagcaaggagtatgttgtgtacttctcaatatgtactctgctcaattgatatctttggttttatctgttaaaatgttaatgcatttcaaataaatatt |
43865014 |
T |
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| Q |
207 |
actcatggctagatgcttgttaaagagtctaaattgttatgtttt |
251 |
Q |
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| T |
43865013 |
actcatggctagatgcttgttaaagagtctaaattgttatgtttt |
43864969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 13852610 - 13852713
Alignment:
| Q |
8 |
tgagaagaagtggccaattgttagtaggaaaacacaacttgtgttgaatgctgttaagtcttcaattcataggggttttgagcctgttcagattgaggag |
107 |
Q |
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| T |
13852610 |
tgagaagaaatggccaactattagtaggaaaacacaactgatattggacgccgtgaaggcttcgattgataagggttttgagcctgtacagattcaggaa |
13852709 |
T |
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| Q |
108 |
tgaa |
111 |
Q |
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|||| |
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| T |
13852710 |
tgaa |
13852713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 13856494 - 13856577
Alignment:
| Q |
28 |
ttagtaggaaaacacaacttgtgttgaatgctgttaagtcttcaattcataggggttttgagcctgttcagattgaggagtgaa |
111 |
Q |
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| T |
13856494 |
ttagtaggaaaacacaactgatattggatgccgtgaaggcttcgattgataagggttttgagcctgtacagattcaggaatgaa |
13856577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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