View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_36 (Length: 249)
Name: NF12001_low_36
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 38357152 - 38356933
Alignment:
| Q |
20 |
cagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38357152 |
cagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacag |
38357053 |
T |
|
| Q |
120 |
cctcaccgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38357052 |
cctcaccgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctactatggatgacttcaagttcacg |
38356953 |
T |
|
| Q |
220 |
gttcttggcgaatgtctctg |
239 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38356952 |
gttcttggcgaatgtctctg |
38356933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 3569779 - 3569566
Alignment:
| Q |
26 |
gcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcac |
125 |
Q |
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||||| ||||| || |||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||| |
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| T |
3569779 |
gcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgccttgaaccacacggcctcac |
3569680 |
T |
|
| Q |
126 |
cgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacggttctt |
225 |
Q |
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| T |
3569679 |
cgaattgtacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggttctt |
3569580 |
T |
|
| Q |
226 |
ggcgaatgtctctg |
239 |
Q |
| |
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||| |||||||||| |
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| T |
3569579 |
ggcaaatgtctctg |
3569566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 3564131 - 3563918
Alignment:
| Q |
26 |
gcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcac |
125 |
Q |
| |
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||||| ||||| || |||||||| | |||||||||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||| | |
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| T |
3564131 |
gcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgccttgaaccatacagcctcgc |
3564032 |
T |
|
| Q |
126 |
cgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacggttctt |
225 |
Q |
| |
|
||||||| |||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||| || || |||||||| || ||||||||||| || |
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| T |
3564031 |
cgaatttgacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggttttt |
3563932 |
T |
|
| Q |
226 |
ggcgaatgtctctg |
239 |
Q |
| |
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||| |||||||||| |
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| T |
3563931 |
ggcaaatgtctctg |
3563918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 3576083 - 3575897
Alignment:
| Q |
53 |
cttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcaccgaatttaacaccattgcgagacaaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| | |
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| T |
3576083 |
cttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaaga |
3575984 |
T |
|
| Q |
153 |
gctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacggttcttggcgaatgtctctg |
239 |
Q |
| |
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|||| ||||| ||||||||||| ||||| ||||||||||| || || |||||||| || ||||||||||||||||| |||||||||| |
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| T |
3575983 |
gctcggggaagacacatcccaaagctcctaacatagcccatctactgtggatgacctcgagttcacggttcttggcaaatgtctctg |
3575897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 3585108 - 3585321
Alignment:
| Q |
26 |
gcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcac |
125 |
Q |
| |
|
||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||||| |
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| T |
3585108 |
gcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagatttgagatcctgccttaaaccacacagcctcac |
3585207 |
T |
|
| Q |
126 |
cgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacggttctt |
225 |
Q |
| |
|
||||||| ||||||||||||| ||| || |||||||| |||||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||||| || |
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| T |
3585208 |
cgaatttcacaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccatctactatgaatgacctcgagttcacggttttt |
3585307 |
T |
|
| Q |
226 |
ggcgaatgtctctg |
239 |
Q |
| |
|
||| |||||||||| |
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| T |
3585308 |
ggcaaatgtctctg |
3585321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 3572826 - 3572630
Alignment:
| Q |
26 |
gcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcac |
125 |
Q |
| |
|
||||| ||||| || |||||||| | |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| || ||||||| |
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|
| T |
3572826 |
gcaaggatgctttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagatttgagatcctgccttgaaccacacggcctcac |
3572727 |
T |
|
| Q |
126 |
cgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctgctatggatgacttcaagttcacggtt |
222 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||||||||| |
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|
| T |
3572726 |
cgaatttaacaccattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccacctactgtgaatgacctctagttcacggtt |
3572630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 13276060 - 13275969
Alignment:
| Q |
23 |
atggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaacca |
114 |
Q |
| |
|
|||||||| ||||| || ||||| || | ||||||||| ||||| ||||| || |||||||| |||||||| ||||| | |||||||||||| |
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|
| T |
13276060 |
atggcaaggatgctttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagatttgggacctggccttgaacca |
13275969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 42602949 - 42602831
Alignment:
| Q |
20 |
cagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacag |
119 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||| ||||| |||||||| |||||||| |||||||||| || ||||| ||||| |||| |
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| T |
42602949 |
cagattgcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaaggccaccctcagagaagatctgggcaccagccttaaaccacacag |
42602850 |
T |
|
| Q |
120 |
cctcaccgaatttaacacc |
138 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
42602849 |
cctcaccgaatttaacacc |
42602831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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