View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12001_low_37 (Length: 249)
Name: NF12001_low_37
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 31189241 - 31189469
Alignment:
| Q |
1 |
agaaaggagcaaataaaagtgctattaaaaaatggtttatgaaactccatgatggtagattgattcaggaggattgagaaatggtagtannnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189241 |
agaaaggagcaaataaaagtgctattaaaaaatgggttgtgaaactccatgatggtagattgattcaggaggattgagaaatggtagtagtgtgtgtgtg |
31189340 |
T |
|
| Q |
101 |
nnncttacatgtgttttatatattttttatggtccccctaagatggttgtgtgtgtattcttgaagtcttgaattcgttagtgtgcgcaagaccgtgttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189341 |
t--cttacatgtgttttatatattttttatggtccccctaagatggttgtgtgtgtattcttgaagtcttgaattcgttagtgtgcgcaagaccgtgttt |
31189438 |
T |
|
| Q |
201 |
ggtaatattctagttgattgaggagcctttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31189439 |
ggtaatattctagttgattgaggagcctttt |
31189469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 31179934 - 31180006
Alignment:
| Q |
15 |
aaaagtgctattaaaaaatggtttatgaaactccatgatggtagattgattcaggaggattgagaaatggtagt |
88 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| | |||||||| |
|
|
| T |
31179934 |
aaaagcgctattaaaaaatgggttgtgaaactccat-atggtagattgattaaggagaattgaaagatggtagt |
31180006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 31224557 - 31224507
Alignment:
| Q |
13 |
ataaaagtgctattaaaaaatggtttatgaaactccatgatggtagattga |
63 |
Q |
| |
|
||||||||||||||||| || | || |||||||||||||||||||||||| |
|
|
| T |
31224557 |
ataaaagtgctattaaagaaagagttgtgaaactccatgatggtagattga |
31224507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University