View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_38 (Length: 245)
Name: NF12001_low_38
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_38 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 28887969 - 28887743
Alignment:
| Q |
15 |
acatcacatcagtgttgatagttaattagtagagttatatacttttgttctctacaaatagctgcttgtttcaaatgctgctaatgaaaaagtactttat |
114 |
Q |
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| T |
28887969 |
acatcacatcagtgttgatagtta----gtagagttatatacttttgttctctacaaatagctgcttgtttcaaatgctgctaatgaaaaagtactttat |
28887874 |
T |
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| Q |
115 |
ccttgacaatgtgactgatggaaaaattagccatcataatatatatttctcttgttccgatgatttatattttannnnnnngtgactacataatctgttg |
214 |
Q |
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| T |
28887873 |
ccttgacaatgtgactgatggaaaaattagccatcataatatatatttctcttgttccgatgatttatattttatttttttgtgactacataatctgttg |
28887774 |
T |
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| Q |
215 |
taagttgcaacaaaacacacatatttctttt |
245 |
Q |
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| T |
28887773 |
taagttgcaacaaaacacacatatttctttt |
28887743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 28897617 - 28897550
Alignment:
| Q |
37 |
taattagtagagttatatacttttgttctctacaaatagctgcttgtttcaaatgctgctaatgaaaa |
104 |
Q |
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| T |
28897617 |
taattaatatagttatatacttttgttttcaccaagtagctgcctgtttgaaatgctgctattgaaaa |
28897550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 28912109 - 28912041
Alignment:
| Q |
50 |
tatatacttttgttctctacaaatagctgcttgtttcaaatgctgctaatgaaaaagtactttatcctt |
118 |
Q |
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| T |
28912109 |
tatataattttgttttcaccaaatggctgactgtttgaaatgctgctagtaaaaaagtactttatcctt |
28912041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 28930686 - 28930605
Alignment:
| Q |
41 |
tagtagagttatatacttttg--ttctctacaaatagctgcttgtttcaaatgctgctaatgaaaa---agtactttatcct |
117 |
Q |
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| T |
28930686 |
tagtagaggtatatacttttggtttcaccaaaaatagctgcctgtttgaaatgctgctagtgaaaaggtagtactttatcct |
28930605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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