View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_49 (Length: 227)
Name: NF12001_low_49
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_49 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24950292 - 24950503
Alignment:
| Q |
1 |
ataacctaattcttaccttccctatcctcgaatcctttgatttgtctcctccatgtaaatggttgttatcgaagacacctattgtgataacagtagatgg |
100 |
Q |
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| T |
24950292 |
ataaccgaattcttaccttccctatcctagaatcctttgatttgtctcctccatgtaaatgattgttatcaaagacacctattgtgataacagtagatgg |
24950391 |
T |
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| Q |
101 |
atcaaatacttcccaagtgtattgttcattccactttggactaaagctatcgacgattgtcctagttcggatccacttctgtccaaatttcgctacgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24950392 |
atcaaatacttcccaagtgtattgttcattccactttggactaaagctatcgacgattgtcctagttcggatccacttctgtccgaatttcgctacgcaa |
24950491 |
T |
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| Q |
201 |
taagcatctgtg |
212 |
Q |
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|||||||||||| |
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| T |
24950492 |
taagcatctgtg |
24950503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 13641 - 13783
Alignment:
| Q |
66 |
ttatcgaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttggactaaagctatcgacgattgtcctag |
165 |
Q |
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| T |
13641 |
ttatcaaatacaccaattgtaatcacagtacaaggatcaaaaacctcccaagtatattgctcattccacctcggcataaagctatcaatgattgtccttg |
13740 |
T |
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| Q |
166 |
ttcggatccacttctgtccaaatttcgctacgcaataagcatc |
208 |
Q |
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| T |
13741 |
ttcgaatccacttctgcccatatttcgctacacaataagcatc |
13783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 9938330 - 9938280
Alignment:
| Q |
89 |
aacagtagatggatcaaatacttcccaagtgtattgttcattccactttgg |
139 |
Q |
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| T |
9938330 |
aacagtcgaaggatcaaatactttccatgtgtattgttcattccactttgg |
9938280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 36810578 - 36810721
Alignment:
| Q |
65 |
gttatcgaagacacctattgtgataacagtagatggatcaaatacttcccaagtgtattgttcattccactttggactaaagctatcgacgattgtccta |
164 |
Q |
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||||||||| ||||| ||||| || ||||| | |||||||| || |||||||| || || ||||||||| | || ||||||||||| ||| || || |
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| T |
36810578 |
gttatcgaatacaccaattgtaatgacagtgcacggatcaaaaacctcccaagtatactgctcattccacctcggtgcaaagctatcgatgatggttctt |
36810677 |
T |
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| Q |
165 |
gttcggatccacttctgtccaaatttcgctacgcaataagcatc |
208 |
Q |
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| T |
36810678 |
gtacgcacccatttctgtccatattttgctacacaataagcatc |
36810721 |
T |
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