View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_5 (Length: 554)
Name: NF12001_low_5
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 3562302 - 3562830
Alignment:
| Q |
11 |
caaaggagggggacataaacctaacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgataaacaaggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3562302 |
caaaggagggggacataaacctaacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctctgataaacaaggg |
3562401 |
T |
|
| Q |
111 |
tacatctgttcacacagttaaacaattagcattcagtccccatgctgtcaagctatcggcacattgattcccttctctgtatatgtgcgttacaatgaag |
210 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3562402 |
tacatctgtccacacagttaaacaattagcattcagtccccatgctgccaagctatcggcacattgattcccttctctgtatatgtgtgttacaatgaag |
3562501 |
T |
|
| Q |
211 |
ttcatgttatccagcatccctttgcagtttctccacctgtttctcaaacaacatggaataagagtcatggatttaaatgccaaaactaccagcgctgagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3562502 |
ttcatgttatccagcatccctttgcagtttctccacctgtttctcaaacaacatggaataagagtcatggatttaaatgccaaaactaccagcgctgagt |
3562601 |
T |
|
| Q |
311 |
ccgtttctatccatatattcctccaatttatttggtccgctatctcaatggctctaagaattcctgagagctcagcatggaaagctgttcctccacctat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3562602 |
ccgtttctatccatatattcctccaatttatttggtccgctatctcaatggctctaagaattcctgagagctcagcatggaaagctgttcctccacctat |
3562701 |
T |
|
| Q |
411 |
attttcagcaaaggctagcttaaaaacagcttcagagtctctaaatattcccccacaagaggaggtattgggggttgcagcaccatcaatattgcacttc |
510 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3562702 |
attttcagcaaaggctagcttaaaaacagcttcagagtctctaaatattcccccacaagaggaggtattgggggttgcagcaccatcagtattgcacttc |
3562801 |
T |
|
| Q |
511 |
aaccagttttgatatgggggctgccaaat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3562802 |
aaccagttttgatatgggggctgccaaat |
3562830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 9748894 - 9748944
Alignment:
| Q |
46 |
ttgataaacctaaaattaggcataccaagtctattcttaacataatattct |
96 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
9748894 |
ttgataaacctaaagttaggcatacctagtctattcttaacataatattct |
9748944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 34066064 - 34066119
Alignment:
| Q |
33 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacat |
88 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34066064 |
aacctcctagaaattgctaaacctataattaggcataccaagtctattcttaacat |
34066119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 22934512 - 22934420
Alignment:
| Q |
12 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgata |
102 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| || ||||||||||||||||||||||||||||| | ||| || |||||| ||||| ||||| |
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|
| T |
22934512 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggcataccaagacgatttttgacataaaattctctgata |
22934420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 21025700 - 21025757
Alignment:
| Q |
12 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggca |
67 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| || |||||||||||||||||||||| |
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|
| T |
21025700 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggca |
21025757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 23352460 - 23352368
Alignment:
| Q |
12 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgata |
102 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| || ||||||||||||||||||||||||||||| | ||| || |||||| ||||| ||||| |
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|
| T |
23352460 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggcataccaagacgatttttgacataaaattctctgata |
23352368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 30039593 - 30039661
Alignment:
| Q |
12 |
aaaggagggggacataaacctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctat |
79 |
Q |
| |
|
|||||||||||||| | ||| || || |||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30039593 |
aaaggagggggacagataccaaaaccacctagaagttgataaacctaaagttaggcataccaagtctat |
30039661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 17704580 - 17704529
Alignment:
| Q |
33 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattctta |
84 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | || |||||||||| |
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|
| T |
17704580 |
aacctcctcgaagttgataaacctaaaattaggcatgctaattctattctta |
17704529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 7728120 - 7728181
Alignment:
| Q |
33 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattct |
96 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||| |||||||||||||| ||||| |||||| |
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|
| T |
7728120 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacatagtattct |
7728181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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