View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12001_low_52 (Length: 206)
Name: NF12001_low_52
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12001_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 13949907 - 13949727
Alignment:
| Q |
19 |
cataggttataa-aatatag--aaggacttacttgtacatgtagatgtcttttccaggtaacaactttttcctacaaagaaaacaaagctcaagaaacgt |
115 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13949907 |
cataggttataataatatagggaaggacttacttgtacatgtagatgtcttttccaggtaacagctttttcctacaaagaaaacaaagctcaagaaacgt |
13949808 |
T |
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| Q |
116 |
tgtttgttgttcctgaaaatgagattcatgatgaaaataagaactgaaagaaactatagaagattgtttgttgttgatact |
196 |
Q |
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| T |
13949807 |
tgtttgttgttcctgaaaatgagattcatgatgaaaataagaactgaaagaaactatagaagattgtttgttgttgatact |
13949727 |
T |
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Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 14091114 - 14090934
Alignment:
| Q |
19 |
cataggttataa-aatatag--aaggacttacttgtacatgtagatgtcttttccaggtaacaactttttcctacaaagaaaacaaagctcaagaaacgt |
115 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14091114 |
cataggttataataatatagggaaggacttacttgtacatgtagatgtcttttccaggtaacagctttttcctacaaagaaaacaaagctcaagaaacgt |
14091015 |
T |
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| Q |
116 |
tgtttgttgttcctgaaaatgagattcatgatgaaaataagaactgaaagaaactatagaagattgtttgttgttgatact |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14091014 |
tgtttgttgttcctgaaaatgagattcatgatgaaaataagaactgaaagaaactatagaagattgtttgttgttgatact |
14090934 |
T |
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