View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12001_low_9 (Length: 425)

Name: NF12001_low_9
Description: NF12001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12001_low_9
NF12001_low_9
[»] chr3 (15 HSPs)
chr3 (19-418)||(19839212-19839611)
chr3 (30-416)||(19956905-19957288)
chr3 (21-412)||(20035505-20035896)
chr3 (73-371)||(19832687-19832985)
chr3 (21-274)||(19819460-19819713)
chr3 (157-393)||(26647848-26648084)
chr3 (95-269)||(19813224-19813398)
chr3 (162-416)||(20033377-20033631)
chr3 (101-344)||(20006239-20006479)
chr3 (262-400)||(20007415-20007553)
chr3 (236-371)||(19951990-19952125)
chr3 (294-400)||(20015376-20015482)
chr3 (293-412)||(19813108-19813227)
chr3 (262-400)||(26653985-26654123)
chr3 (325-386)||(19819405-19819466)
[»] chr8 (3 HSPs)
chr8 (231-350)||(22685452-22685571)
chr8 (314-386)||(22655518-22655590)
chr8 (251-284)||(22655475-22655508)
[»] chr1 (1 HSPs)
chr1 (286-398)||(1718059-1718171)
[»] chr5 (2 HSPs)
chr5 (294-400)||(9815871-9815977)
chr5 (262-400)||(26354070-26354208)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 19839611 - 19839212
Alignment:
Q  19 tgtctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaagg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19839611 tgtctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaaag 19839512  T
Q  119 aacaagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaaca 218  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19839511 aacaagaatgttatgttttggaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaaca 19839412  T
Q  219 tcaacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  19839411 tcaacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaacttttccaaaagtaagagtatcaaccagattgggagaaaatccag 19839312  T
Q  319 gttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccgacgcaaaatattcttctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  19839311 gttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccaacgcacaatattcttctc 19839212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 19957288 - 19956905
Alignment:
Q  30 tctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaaggaacaagagtgt 129  Q
    |||||||||||||||||| ||||||  ||||| |||  |||| |||||||||||| ||||| | |||||| ||||||| ||||||| |||||||||||||    
T  19957288 tctttctctaaatgcttatatttatggattatgctaccacaattgtactcttccatcacatgccgacaatcctcaacagatatggagggaacaagagtgt 19957189  T
Q  130 tatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatcaacacaaaa 229  Q
    ||||||   ||||||||||||||||||||||||||| ||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  19957188 tatgttttggaggaagacttgaagaaccatcagcataaatatcttgatcagctctcaaa---tcatgaacagaattttcataaggaacatcaacataaaa 19957092  T
Q  230 ttcattaaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaa 329  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19957091 tttatcgaccttcctagttttagcttttgagccatcatcacaaacattttcaaaagtaagagtatcaacaagattgggagaaaatccaggttgaacacaa 19956992  T
Q  330 acctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccgacgcaaaatattcttc 416  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  19956991 acctccataccacttctgttaaactttcctacgtgaggtctacgcttccttgaacttgaacttctcttccgacgcacaattttcttc 19956905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 20035505 - 20035896
Alignment:
Q  21 tctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaaggaa 120  Q
    ||||||||||||||||||||||||||| ||||||  ||||  |||  ||||    ||||||| |||| || |  | ||| ||||||| ||||||| ||||    
T  20035505 tctttcaaatctttctctaaatgcttatatttatggattaggctaccacaatcccactcttcgaacaaatgccaataatcctcaacagatatggagggaa 20035604  T
Q  121 caagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatc 220  Q
    ||||| || ||| ||   |||||||||||| |||||||||| ||||||| ||||||| |||||| ||||||||| ||||| |||||||||||||||||||    
T  20035605 caagaatggtattttttggaggaagacttgcagaaccatcaacatcaattttttgattagctcttaaaaaatcaggaacataattttcataaggaacatc 20035704  T
Q  221 aacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggt 320  Q
    |||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||     
T  20035705 aacataaaatttatcaaccttcctagttttagcttttgacccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccaggc 20035804  T
Q  321 tgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccgacgcaaaatatt 412  Q
    ||||||||||| |||||||||||| |||| || ||||||||||| |||||  | |  |||||||| |||||||| |||||||||| ||||||    
T  20035805 tgaacacaaacttcaataccacttttgtttaattttcctacatgtggtctgtgttgtcttgaactggaacttcttttccgacgcacaatatt 20035896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 73 - 371
Target Start/End: Complemental strand, 19832985 - 19832687
Alignment:
Q  73 tgtactcttccaacacatcctgacaattctcaacacatatggaaggaacaagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatatt 172  Q
    |||||||||||||||||  |||||||| ||||||| ||||||| | |||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  19832985 tgtactcttccaacacaggctgacaatcctcaacagatatggatgtaacaagagtgttatgttttggaggaagacttgaagaaccatcggcatcaatatt 19832886  T
Q  173 ttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatcaacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaa 272  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | || ||||||||||||||||||    
T  19832885 ttgatcagctctgaaacaatcatgaacagaattttcataaggaacatcaacataaaattcatcaaccttcctagttattgcctttgagccatcatcacaa 19832786  T
Q  273 acatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtcta 371  Q
    || ||| ||||| || ||||||||||||||||||| |||||||||||| || ||  | | ||||||||||||   ||||| |||||||||  |||||||    
T  19832785 actttttcaaaaataggagtatcaacaagattgggagaaaatccaggtagagcatcagcttcaataccacttgcattaaaatttcctacacaaggtcta 19832687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 19819713 - 19819460
Alignment:
Q  21 tctttcaaatctttctctaaatgcttagatttatcaattattctaatacaactgtactcttccaacacatcctgacaattctcaacacatatggaaggaa 120  Q
    |||||||||||||||||||||||||||   ||||  ||||| | |  ||||  || |||||||||||||| |||| ||| ||| ||| ||||||||||||    
T  19819713 tctttcaaatctttctctaaatgcttacccttatggattatgccaccacaatagttctcttccaacacatgctgaaaatcctcgacagatatggaaggaa 19819614  T
Q  121 caagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatc 220  Q
    |||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19819613 caagagtgttatgttttggaggaagacttgaagaagcatcagcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaacatc 19819514  T
Q  221 aacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaac 274  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  19819513 aacacaaaattcgttaaccttcctagttttagaatttgagccatcatcacaaac 19819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 393
Target Start/End: Complemental strand, 26648084 - 26647848
Alignment:
Q  157 catcagcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatcaacacaaaattcattaaccttcctagttttagcttt 256  Q
    |||||||||||||||||| ||||||| ||||| ||| |||||||| ||||||||||||||||||  || |||| |||  ||||||||||||||||| |||    
T  26648084 catcagcatcaatattttcatcagctttcaaacaattatgaacagcattttcataaggaacatcggcataaaaatcagcaaccttcctagttttagtttt 26647985  T
Q  257 tgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaacttt 356  Q
     || |||| || |||||  ||||||||| ||||||| |||||||||||||| | ||| |||||  |||||| ||| ||| ||||||||||||||   |||    
T  26647984 ggaaccattataacaaaattttccaaaaataagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatctttt 26647885  T
Q  357 cctacatgaggtctacgcttccttgaacttgaacttc 393  Q
    ||||||  |  |||| | ||||||||||||| |||||    
T  26647884 cctacacaaactctatgtttccttgaacttgcacttc 26647848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 19813398 - 19813224
Alignment:
Q  95 acaattctcaacacatatggaaggaacaagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatca 194  Q
    ||||| ||||||| ||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||| ||| ||||||||||| |   |||    
T  19813398 acaatcctcaacagatatggaaggaacaagagtcttatgttttcgaggaagacttgaagaaccatcagcatcaatactttcatcagctctcagactctca 19813299  T
Q  195 tgaacagaattttcataaggaacatcaacacaaaattcattaaccttcctagttttagcttttgagccatcatca 269  Q
    ||||||||||||||||| |||||||   || ||||| ||| | ||||| ||||||||| |||||| |||||||||    
T  19813298 tgaacagaattttcatatggaacattggcataaaatccatcagccttcatagttttagtttttgaaccatcatca 19813224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 162 - 416
Target Start/End: Original strand, 20033377 - 20033631
Alignment:
Q  162 gcatcaatattttgatcagctctcaaaaaatcatgaacagaattttcataaggaacatcaacacaaaattcattaaccttcctagttttagcttttgagc 261  Q
    ||||||||||||| | ||||| ||||| ||| ||||||||||||||||||||||||||||  | |||  |||| || |||||||||||||| |||||| |    
T  20033377 gcatcaatattttcaccagctttcaaacaattatgaacagaattttcataaggaacatcagtataaagatcatcaatcttcctagttttagattttgaac 20033476  T
Q  262 catcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctac 361  Q
    ||||||||||||  ||||||||  ||||||| |||||||||||||| | ||||||||||  ||||| | | ||| ||| ||||  ||||   |||||||     
T  20033477 catcatcacaaaattttccaaacataagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctat 20033576  T
Q  362 atgaggtctacgcttccttgaacttgaacttctcttccgacgcaaaatattcttc 416  Q
    | |||||||||  || |||||||||| |||||||||  | |||| ||||||||||    
T  20033577 acgaggtctacattttcttgaacttgcacttctcttatgccgcataatattcttc 20033631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 344
Target Start/End: Original strand, 20006239 - 20006479
Alignment:
Q  101 ctcaacacatatggaaggaacaagagtgttatgttgcagaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaaaaatcatgaaca 200  Q
    |||||||  ||||||||||||||||||||||||||   ||||||||||||||| | | |||||||||||| ||| ||||| |||||||  ||||||||||    
T  20006239 ctcaacaagtatggaaggaacaagagtgttatgttttggaggaagacttgaaggagcgtcagcatcaatactttcatcaggtctcaaattatcatgaaca 20006338  T
Q  201 gaattttcataaggaacatcaacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaa 300  Q
      ||||| ||||||||||||  |   ||| |||| | | ||| ||||||| | |||||| ||||||| | ||| | |||||||| |||||||  ||||||    
T  20006339 -tattttaataaggaacatcggctttaaaatcatcagcattcatagtttttgtttttgaaccatcat-ataaa-aattccaaaaataagagtgccaacaa 20006435  T
Q  301 gattgggtgaaaatccaggttgaacacaaacctcaataccactt 344  Q
    ||||||| | |||||||  | |||||| ||| ||||||||||||    
T  20006436 gattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 400
Target Start/End: Original strand, 20007415 - 20007553
Alignment:
Q  262 catcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctac 361  Q
    ||||||||||||  |||||||||  ||||| ||||||||||||||| | |||||||||| |||||| ||| ||||| | |||| ||||| | | ||||||    
T  20007415 catcatcacaaaattttccaaaaacaagagcatcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctac 20007514  T
Q  362 atgaggtctacgcttccttgaacttgaacttctcttccg 400  Q
    ||||| |||| |  |||||||| ||| ||||||||||||    
T  20007515 atgagatctatgtctccttgaaattgcacttctcttccg 20007553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 19952125 - 19951990
Alignment:
Q  236 aaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctca 335  Q
    |||||||||| |||||| | | || ||||||||||||| |||||||||   |||||| ||||||  |||||  | |||||||||| |||||| |||  ||    
T  19952125 aaccttcctaattttagttctggaaccatcatcacaaaaatttccaaagacaagagtttcaacacaattggtaggaaatccaggtggaacaccaacaaca 19952026  T
Q  336 ataccacttatgttaaactttcctacatgaggtcta 371  Q
     ||||||||||||||   ||||||||||||||||||    
T  19952025 ttaccacttatgttagcttttcctacatgaggtcta 19951990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 400
Target Start/End: Original strand, 20015376 - 20015482
Alignment:
Q  294 tcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttc 393  Q
    ||||||||||||||  ||||||||||| |||||| ||| ||| |||  ||| |||||   ||||||| |||||||||| | ||||||||||||  |||||    
T  20015376 tcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaactttcacttc 20015475  T
Q  394 tcttccg 400  Q
    |||||||    
T  20015476 tcttccg 20015482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 19813227 - 19813108
Alignment:
Q  293 atcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaactt 392  Q
    ||||||||||||||| | |||| ||||| |||||  | |  ||||||||||| ||| ||| ||||||||||| ||||   | || |||||||| ||||||    
T  19813227 atcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaactggaactt 19813128  T
Q  393 ctcttccgacgcaaaatatt 412  Q
    || |||||||||| ||||||    
T  19813127 cttttccgacgcacaatatt 19813108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 400
Target Start/End: Complemental strand, 26654123 - 26653985
Alignment:
Q  262 catcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctac 361  Q
    ||||| ||||||  |||||| || || |||| |||||||||||||| | |||||||||| |||||| ||  || | ||||||| || ||   || |||||    
T  26654123 catcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctac 26654024  T
Q  362 atgaggtctacgcttccttgaacttgaacttctcttccg 400  Q
    ||||| |||| | |||||||||||   ||||||||||||    
T  26654023 atgagctctaggtttccttgaactcacacttctcttccg 26653985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 19819466 - 19819405
Alignment:
Q  325 cacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaactt 386  Q
    ||||||| |||||||||||||||||||| ||| |||||   |||||| | ||||||||||||    
T  19819466 cacaaacttcaataccacttatgttaaaattttctacacagggtctatgtttccttgaactt 19819405  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 350
Target Start/End: Original strand, 22685452 - 22685571
Alignment:
Q  231 tcattaaccttcctagttttagcttttgagccatcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaa 330  Q
    |||| |||||||||||||||||||||||| ||| ||||||  |  ||||||||| |||| || | ||||||||||   |||||||||||| |||||| ||    
T  22685452 tcatcaaccttcctagttttagcttttgaaccaccatcactgaagtttccaaaattaagtgtgttaacaagattgaaagaaaatccaggtggaacaccaa 22685551  T
Q  331 cctcaataccacttatgtta 350  Q
    | ||| |||||||| |||||    
T  22685552 catcattaccacttctgtta 22685571  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 22655518 - 22655590
Alignment:
Q  314 tccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaactt 386  Q
    ||||||| |||||| ||| ||| |||||||| ||||||| || ||||||||||||||| | ||||||||||||    
T  22655518 tccaggtagaacaccaacttcagtaccacttctgttaaatttccctacatgaggtctatgtttccttgaactt 22655590  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 22655475 - 22655508
Alignment:
Q  251 agcttttgagccatcatcacaaacatttccaaaa 284  Q
    ||||||||||||||||||||||||||||||||||    
T  22655475 agcttttgagccatcatcacaaacatttccaaaa 22655508  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 1718171 - 1718059
Alignment:
Q  286 taagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaact 385  Q
    ||||||| |||||||||||||| | |||||||||| |||||| ||| ||| |||||||| |||||   |||||||||| || |||| | ||| ||||||     
T  1718171 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 1718072  T
Q  386 tgaacttctcttc 398  Q
    || || |||||||    
T  1718071 tgcacatctcttc 1718059  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 9815977 - 9815871
Alignment:
Q  294 tcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttc 393  Q
    |||||||||||||| | |||| ||||| ||| || ||| ||| ||| |||| ||| ||  ||||||||||||| |||   |||||||||||||  |||||    
T  9815977 tcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttc 9815878  T
Q  394 tcttccg 400  Q
    |||||||    
T  9815877 tcttccg 9815871  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 400
Target Start/End: Original strand, 26354070 - 26354208
Alignment:
Q  262 catcatcacaaacatttccaaaagtaagagtatcaacaagattgggtgaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctac 361  Q
    |||||||||||| ||||  | || ||||| | |||||||||||||| | |||||||||| |||||| ||| ||| ||  |||| |||||   ||||| ||    
T  26354070 catcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaac 26354169  T
Q  362 atgaggtctacgcttccttgaacttgaacttctcttccg 400  Q
    ||||| |||  | |||||||| |||  ||||||||||||    
T  26354170 atgagctctgtgtttccttgagctttcacttctcttccg 26354208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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