View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12002_high_1 (Length: 518)
Name: NF12002_high_1
Description: NF12002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12002_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 48156743 - 48156251
Alignment:
| Q |
18 |
acaaggagtgcagttttacctgaatctattattcctgaacttgatagagcggcaaagagtgtaggaagagactttagcaagtttatcagaacagataaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48156743 |
acaaggagtgcagttttacctgaatctattattcctgaacttgatagagcggcaaagagtgtaggaagagactttagcaagttcatcagaacagataaca |
48156644 |
T |
|
| Q |
118 |
catgtggaccagagccttccattgtggaaaggctggagaaaaaggttgaggaaggagagaaaaccattgtgagggaagttgaagagttagaagaggaggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156643 |
catgtggaccagagccttccattgtggaaaggctggagaaaaaggttgaggaaggagagaaaaccattgtgagggaagttgaagagttagaagaggaggt |
48156544 |
T |
|
| Q |
218 |
ggagaaggatttggagaaggttggcaaaacagaaatgaccttgttacaaaggctggcagaagggtttaaagtgtttcaagaagatgaggaaaatttctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156543 |
ggagaaggatttggagaaggttggcaaaacagaaatgaccttgttacaaaggctggcagaagggtttaaagtgtttcaagaagatgaggaaaatttctta |
48156444 |
T |
|
| Q |
318 |
agagggttatctaaagaagaaatggagatactggacagtctcaaattggaagctgaggaagtagaagagctctttggacgtgccttgccactaaggaaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156443 |
agagggttatctaaagaagaaatggagatactggacagtctcaaattggaagctgaggaagtagaagagctctttggacgtgccttgccactaaggaaac |
48156344 |
T |
|
| Q |
418 |
taagataacttataaatatgagaaaaaatgttgtaacatattttttgatatacgtgtttaatattgaatgaattctcatgttggttctctgct |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156343 |
taagataacttataaatatgagaaaaaatgttgtaacatattttttgatatacgtgtttaatattgaatgaattctcatgttggttctctgct |
48156251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University