View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12002_high_2 (Length: 282)
Name: NF12002_high_2
Description: NF12002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12002_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 43996583 - 43996320
Alignment:
| Q |
1 |
cttcaggaatatgtcctttgtaattttcatattcagtgtcattactgttagccctatacaagtcataaccaagagcatggtcaccaggctttaaaagatg |
100 |
Q |
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| T |
43996583 |
cttcaggaatatgtcctttgtaattttcatattcagtgtcattactgttagccctatacaagtcataaccaagagcatggtcaccaggctttaaaagatg |
43996484 |
T |
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| Q |
101 |
ccccaaatgagttctaatagaaaagattgtgtcattctttccaaaatccgaaactcgggcaacttgagcatcagctaaaacatattttgtgccacccata |
200 |
Q |
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| T |
43996483 |
ccccaaatgagttctaatagaaaagattgtg----------aaaaatccgaaactcgggcaacttgagcatcagctaaaacatattttgtgccacccata |
43996394 |
T |
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| Q |
201 |
gtaatctcagatggaccaactttcgatgaaacaacctccagatccaacactatatattccaccaactctctgct |
274 |
Q |
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| T |
43996393 |
gtaatctcagatggaccaattttcgatgaaacaacctccagatccaacactatatattccaccaactctttgct |
43996320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 29271941 - 29271756
Alignment:
| Q |
37 |
tgtcattactgttagccctatacaagtcataaccaagagcatggtcaccaggctttaaaagatgccccaaatgagttctaatagaaaagattgtgtcatt |
136 |
Q |
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||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||| || |||||||| |
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| T |
29271941 |
tgtcattactgttcgcagcatacaaatcataaccaagagcattgtcaccaggctttaaaagatggcccagatgagttctgatagaaaacatcgtgtcatt |
29271842 |
T |
|
| Q |
137 |
ctttccaaaatccgaaactcgggcaacttgagcatcagctaaaacatattttgtgccacccatagtaatctcagatggaccaactt |
222 |
Q |
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| T |
29271841 |
ctttccaaagtcagacacacgggccacttgagcatcagctaaagcatatttcgtgccaccgacattaacctcagatgaaacaactt |
29271756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 29271768 - 29271719
Alignment:
| Q |
225 |
gatgaaacaacctccagatccaacactatatattccaccaactctctgct |
274 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||||| |||||| |
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| T |
29271768 |
gatgaaacaacttccacatccaacactatatactccaccaactgtctgct |
29271719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 1850046 - 1850012
Alignment:
| Q |
62 |
gtcataaccaagagcatggtcaccaggctttaaaa |
96 |
Q |
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| T |
1850046 |
gtcataaccaagagcatggtcaccaggttttaaaa |
1850012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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