View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12002_low_3 (Length: 306)
Name: NF12002_low_3
Description: NF12002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12002_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 40286866 - 40287133
Alignment:
| Q |
20 |
tcattcgtagcatcaattcatttctaaattttggatatctacatttgccaatttgtttagaatcattatcattattgtttattnnnnnnnntcaccatga |
119 |
Q |
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| T |
40286866 |
tcattcgtagcatcaattcatttctaaattttggatatctacatttgccaatttgtttagcatcattatcattattgtttattaaaaaaaatcaccatga |
40286965 |
T |
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| Q |
120 |
ttatnnnnnnnncctagatacggataatttgttacgttgtatctctcactccaacctgccgtttgatttccttaggattaggcgttgttttagtctgttt |
219 |
Q |
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| T |
40286966 |
ttataaaaaaaacctagataaggataatttgttacgttgtatctctcactccaacctgccgtttgatttccttaggattaggcgttgtttta--ctcttt |
40287063 |
T |
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| Q |
220 |
tgaattggaaatcaaacgattaagacctatggatcataatttaaccgctttaaactgttcgattggaaat |
289 |
Q |
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| T |
40287064 |
tgaattggaaatcaaacgattaagacctatggatcataatttaaccgctttaaactgttcgattggaaat |
40287133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 40459460 - 40459389
Alignment:
| Q |
218 |
tttgaattggaaatcaaacgattaagacctatggatcataatttaaccgctttaaactgttcgattggaaat |
289 |
Q |
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| T |
40459460 |
tttgaatcggaaatcaaatgattaagacctctgaatcatgatttaaccgccttaaaccgttcaattggaaat |
40459389 |
T |
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