View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12003_high_1 (Length: 596)
Name: NF12003_high_1
Description: NF12003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12003_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Original strand, 3308005 - 3308563
Alignment:
| Q |
20 |
atctataacctaacaaaaatgttattccacttcaaattgttctaaacaacagaaatgaacatggatttttgtggttacctctagcagtatcagaaaaatt |
119 |
Q |
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| T |
3308005 |
atctataacctaacaaacatgttattccacttcaaattgttctaaacaacaggaatgaacatggatttttgtggttacctctagcagtatcagaaaaatt |
3308104 |
T |
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| Q |
120 |
tgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccattataaaatgattatcaacttcactcaacacttga |
219 |
Q |
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| T |
3308105 |
tgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccattataaaatgattatcaacttcactcaacacttga |
3308204 |
T |
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| Q |
220 |
atcatatccatattcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccg |
319 |
Q |
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| T |
3308205 |
atcatatccatattcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccg |
3308304 |
T |
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| Q |
320 |
gcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttg |
419 |
Q |
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| T |
3308305 |
gcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttg |
3308404 |
T |
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| Q |
420 |
ttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggcggcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcc |
519 |
Q |
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| T |
3308405 |
ttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggctgcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcc |
3308504 |
T |
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| Q |
520 |
tgtttcatgaagtaatgacggtctttacaacttgttatggcttcttcattctccgtttt |
578 |
Q |
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| T |
3308505 |
tgtttcatgaagtaatgacggtctttacaacttgttatggcttcttcattctccatttt |
3308563 |
T |
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