View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12003_high_10 (Length: 311)
Name: NF12003_high_10
Description: NF12003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12003_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 11119369 - 11119116
Alignment:
| Q |
29 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119369 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
11119270 |
T |
|
| Q |
129 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119269 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
11119170 |
T |
|
| Q |
229 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
11119169 |
tttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 11111598 - 11111345
Alignment:
| Q |
29 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
128 |
Q |
| |
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||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11111598 |
gatttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattgaatttataaagttct |
11111499 |
T |
|
| Q |
129 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
228 |
Q |
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| T |
11111498 |
gaaagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctt |
11111399 |
T |
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| Q |
229 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
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|||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
11111398 |
tttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 10793196 - 10793449
Alignment:
| Q |
29 |
gatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttct |
128 |
Q |
| |
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||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |
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| T |
10793196 |
gattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctct |
10793295 |
T |
|
| Q |
129 |
ggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctt |
228 |
Q |
| |
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|||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
10793296 |
caaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtcactttgaagcaaaccctt |
10793395 |
T |
|
| Q |
229 |
tttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
| |
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|||| | ||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
10793396 |
tttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
37 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
136 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
137 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
236 |
Q |
| |
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| ||||| | | | | || ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| |||||||| ||| |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
237 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
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|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
38 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
137 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
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| Q |
138 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
237 |
Q |
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|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
238 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 153 - 282
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
153 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
253 |
gttcttgtctaatttatcaggagttgttgg |
282 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
38 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
137 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
138 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
237 |
Q |
| |
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| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
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| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
238 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
282 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32706698 - 32706733
Alignment:
| Q |
1 |
attagctccttcctctttattatatttggatttctt |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
32706698 |
attagctccttcctctttattatatttggatttctt |
32706733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
172 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
230 |
Q |
| |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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