View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12003_high_7 (Length: 382)
Name: NF12003_high_7
Description: NF12003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12003_high_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 382
Target Start/End: Original strand, 46256518 - 46256879
Alignment:
| Q |
21 |
acatcatcaatatccagaccctgcgctgccacaacgtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
120 |
Q |
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| T |
46256518 |
acatcattaatatacagatcctgcgctgccacaacgtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
46256617 |
T |
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| Q |
121 |
tacaatcaaaagagagaattgnnnnnnngaaacatatcaagttcataagtattctgaagtttcaactataacaaaattcattaatatctcacctcgtgtt |
220 |
Q |
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| T |
46256618 |
tacaatcaaaagagaaaattgaaaaaaagaaacatatcaagttcataagtattctgaagtttcaactataacaaaattcattaatatctcacctcacgtt |
46256717 |
T |
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| Q |
221 |
gtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgtctcagtgaatataattgtttgacc |
320 |
Q |
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| T |
46256718 |
gtgcttgctgaatgtcaccattgagagctcttgctccatgcaacaactctgcaagctgagatgctgattcctttgtctcagtaaatataattgtttgacc |
46256817 |
T |
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| Q |
321 |
ttcgctgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatc |
382 |
Q |
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| T |
46256818 |
ttcactgaattagaacagtgtagcaaaacaatcaagatttaaattccacaagaagatttatc |
46256879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 183 - 382
Target Start/End: Original strand, 46247046 - 46247245
Alignment:
| Q |
183 |
caactataacaaaattcattaatatctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagat |
282 |
Q |
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| T |
46247046 |
caactataacaaacttcattaatagctcacctcgcgttgtgcttgttgtatgtcaccatggagagctcttgctccaggcaacaactctgcaagctgagat |
46247145 |
T |
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| Q |
283 |
gctgattcctttgtctcagtgaatataattgtttgaccttcgctgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatc |
382 |
Q |
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| T |
46247146 |
gctgattcctttgtctcagtgaatataattgttcgaccttcactgaattagaacagtgtaccgaaacaatgaagatttaaattcaacaggaagatttatc |
46247245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 46246837 - 46246929
Alignment:
| Q |
29 |
aatatccagaccctgcgctgccacaac-gtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
120 |
Q |
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| T |
46246837 |
aatatccagaccccgtgctgccacatttgtggcaactaatgtcatgaatttcccatacctgaagccagacaaagtaacctgcaagtgacagga |
46246929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 20121535 - 20121641
Alignment:
| Q |
208 |
ctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgtctcagtgaata |
307 |
Q |
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|||||||| |||||| ||||| |||||||||| |||||||||||||||| |||||| | ||||||| ||| || || |||||| |||| | |||| |
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| T |
20121535 |
ctcacctcacgttgtgactgctgtatgtcaccatggagagctcttgctccaggcaacaatccagcaagctcagaagcagactcctttttctccgcaaata |
20121634 |
T |
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| Q |
308 |
taattgt |
314 |
Q |
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||||||| |
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| T |
20121635 |
taattgt |
20121641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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