View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12003_high_9 (Length: 345)
Name: NF12003_high_9
Description: NF12003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12003_high_9 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 11789282 - 11789613
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
11789282 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatacttt |
11789381 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11789382 |
ttgtttggagtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
11789481 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaa |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11789482 |
tgagtattattggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaa |
11789581 |
T |
|
| Q |
308 |
tatcaataaggcacatcttgattacttttatt |
339 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
11789582 |
tatcaataagacacatcttgattacttttatt |
11789613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 11678269 - 11678600
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11678269 |
tgagatgaaaagactaaaaatagcacaagaatatggtattgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatacttt |
11678368 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11678369 |
ttgtttggagtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
11678468 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11678469 |
tgagtattgttggtgttggaagctttcttagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaa |
11678568 |
T |
|
| Q |
308 |
tatcaataaggcacatcttgattacttttatt |
339 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
11678569 |
tatcaataaggcacattttgattacttttatt |
11678600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 11686548 - 11686879
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11686548 |
tgagatgaaaagactaaaaatagcacaagaatatggtattgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatacttt |
11686647 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686648 |
ttgtttggagtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
11686747 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11686748 |
tgagtattgttggtgttggaagctttcttagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaa |
11686847 |
T |
|
| Q |
308 |
tatcaataaggcacatcttgattacttttatt |
339 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
11686848 |
tatcaataaggcacattttgattacttttatt |
11686879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 11699461 - 11699791
Alignment:
| Q |
15 |
aaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttg |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
11699461 |
aaaagactaaaagtagcacaagagcatggtcttgttgatgatcctaatgcaactgttccaatgagtatagggtggttgattcctcagtatgttttgtttg |
11699560 |
T |
|
| Q |
115 |
gtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtat |
214 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699561 |
gtgtttctgaggtttttaccatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtat |
11699660 |
T |
|
| Q |
215 |
tgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaat |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
11699661 |
tattggtgttggaagctttctaagtggctttctcatttcattgatagaacattttactggcaaagatggtcatgaaagttggttttgtgacaatatcaat |
11699760 |
T |
|
| Q |
315 |
aaggcacatcttgattacttttatttgttac |
345 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
11699761 |
aaggcacatcttgattacttttattggttac |
11699791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 11708914 - 11709238
Alignment:
| Q |
15 |
aaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttg |
114 |
Q |
| |
|
|||||| |||| ||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11708914 |
aaaagattaaaaatagcacaaaaatatggtcttgttgatgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttg |
11709013 |
T |
|
| Q |
115 |
gtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtat |
214 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11709014 |
gagtttctgaggtttttacaatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggactggcactctatttgagtat |
11709113 |
T |
|
| Q |
215 |
tgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
11709114 |
tgttggtgttggaagctttctaagtggctttctcatttcattgatagaacattttagtggcaaagatggacatgaaacttggttttgtgacaatatcaat |
11709213 |
T |
|
| Q |
315 |
aaggcacatcttgattacttttatt |
339 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
11709214 |
aaggcacattttgattacttttatt |
11709238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 11801449 - 11801688
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11801449 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatacttt |
11801548 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11801549 |
ttgtttggagtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
11801648 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagtggctttct |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11801649 |
tgagtattattggtgttggaagctttctaagtggctttct |
11801688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 11785695 - 11785926
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11785695 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaatgcaactgttccaatgagtatatggtggttggttcctcaatacttt |
11785794 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11785795 |
ttgtttggagtatctgaggtttttactattgttggtgttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
11785894 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagt |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
11785895 |
tgagtattattggtgttggaagctttctaagt |
11785926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 11792726 - 11792920
Alignment:
| Q |
145 |
ttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttggaagctttctaagtggctt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11792726 |
ttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattattggtgttggaagctttctaagtggctt |
11792825 |
T |
|
| Q |
245 |
tctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaatatcaataaggcacatcttgattacttttatt |
339 |
Q |
| |
|
||| ||||| |||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11792826 |
tctcatttcattgatagaacattttactggcaaagatggtcatgaaacttggttttgtgacaatatcaataaggcacatcttgattacttttatt |
11792920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 20697 - 21028
Alignment:
| Q |
8 |
tgagatgaaaagactaaagatagcacaagagcatggtcttgttgatgatccaaaagcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20697 |
tgagattaaaagactaaagatagcacaagagcatagtcttgatgatgatccaaatgcaactgtaccaatgagtatatggtggttgattcctcaatacttt |
20796 |
T |
|
| Q |
108 |
ttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20797 |
ttgtttggtgtttcagaggtttttaccatggttggtcttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatt |
20896 |
T |
|
| Q |
208 |
tgagtattgttggtgttggaagctttctaagtggctttctaatttctttgatagaacattttagtggcaaagatggacatgatagttggttttgtgacaa |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
20897 |
tgagtattattggtgttggaagctttcttagtggatttctaatttctttaatagaacattttagtgccaaagatggtcatgatagttggttttgtgacaa |
20996 |
T |
|
| Q |
308 |
tatcaataaggcacatcttgattacttttatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
20997 |
tatcaataaggcacatcttgattacttttatt |
21028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 4982 - 4798
Alignment:
| Q |
70 |
taccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagaggtttttactatggttggtcttcaggaatttttctatgatcaagt |
169 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| | |||||||| || || || || ||||| ||||| ||||| || ||||||||||||||||| || |
|
|
| T |
4982 |
tacctatgagcatctggtggttgattcctcaatatgtcttgtttggagtatctgatgtctttacaatggtaggtctgcaagaatttttctatgatcaggt |
4883 |
T |
|
| Q |
170 |
cccaaatgaactaagaagcatgggacttgcactctatttgagtattgttggtgttggaagctttctaagtggctttctaatttct |
254 |
Q |
| |
|
||| ||||| ||||||| |||| ||| | |||||||| |||||| |||| ||||| |||||||| ||| ||||||| |||||| |
|
|
| T |
4882 |
cccggatgaattaagaagtgtgggtctttccctctatttaagtatttttggggttgggagctttctgagtagctttctcatttct |
4798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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