View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12004_high_3 (Length: 304)
Name: NF12004_high_3
Description: NF12004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12004_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 26086965 - 26086830
Alignment:
| Q |
12 |
catagggtggaaaaagtaacactcaaatatgtattgtatttgtattatctcatgggtgaggcctaaatcatcccgtgataatttgaagataatttacctc |
111 |
Q |
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| T |
26086965 |
catagggtggaaaaagtaacactcaaatatgtattgcatttgtattatctcatggatgaggcctaaatcatcccgtgataatttgaagataatttacctc |
26086866 |
T |
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| Q |
112 |
taatgacaataggattaaattttggaacgaaggaga |
147 |
Q |
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| T |
26086865 |
taatgacaataggattcaattatggaacgaaagaga |
26086830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 26086780 - 26086693
Alignment:
| Q |
162 |
tattcttacgatgaaaatggtaactatttataagaataaaaatgaagaactgtgcgaaaaataaaattatgattacatctttcccctt |
249 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
26086780 |
tattcttacgatgaaaatggtaactatttgtaataataaaaatgaagaactgtccgaaaaataaaattatgattacatgtttcccctt |
26086693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 46269840 - 46269812
Alignment:
| Q |
11 |
gcatagggtggaaaaagtaacactcaaat |
39 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46269840 |
gcatagggtggaaaaagtaacactcaaat |
46269812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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