View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12005_high_2 (Length: 276)
Name: NF12005_high_2
Description: NF12005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12005_high_2 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 31651998 - 31652261
Alignment:
| Q |
13 |
tggacatcaatttaccagtgagagcagtgataaaccaattatagaggcattgaaacaaggtgtacgagtaattgaacttgatttatggccatcttcaact |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31651998 |
tggaaatcaatttaccagtgagagcagtgataaaccaattatagaggcattgaaacaaggtgtacgagtaattgaacttgatttatggccatcttcaact |
31652097 |
T |
|
| Q |
113 |
aaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgttttcttgtatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652098 |
aaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgttttcttgtatct |
31652197 |
T |
|
| Q |
213 |
tatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652198 |
tatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtt |
31652261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 31702227 - 31702490
Alignment:
| Q |
13 |
tggacatcaatttaccagtgagagcagtgataaaccaattatagaggcattgaaacaaggtgtacgagtaattgaacttgatttatggccatcttcaact |
112 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31702227 |
tggaaatcaatttactagtgagagcagtgataaaccaattatagaggctttgaaacaaggtgtacgagtaattgaacttgatttatggccatcttcaact |
31702326 |
T |
|
| Q |
113 |
aaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgttttcttgtatct |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31702327 |
aaagatggtggtattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgttttcttgtatct |
31702426 |
T |
|
| Q |
213 |
tatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtt |
276 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31702427 |
tatggtcttaattcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtt |
31702490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University