View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12005_low_5 (Length: 264)

Name: NF12005_low_5
Description: NF12005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12005_low_5
NF12005_low_5
[»] chr5 (5 HSPs)
chr5 (10-119)||(16194361-16194470)
chr5 (10-95)||(39946555-39946640)
chr5 (27-128)||(29595541-29595642)
chr5 (58-115)||(39945857-39945914)
chr5 (58-128)||(16195107-16195177)
[»] chr1 (3 HSPs)
chr1 (10-115)||(6942203-6942308)
chr1 (80-128)||(2261543-2261591)
chr1 (80-131)||(12449312-12449363)
[»] chr7 (4 HSPs)
chr7 (79-128)||(30581265-30581314)
chr7 (79-124)||(36611737-36611782)
chr7 (57-115)||(3314968-3315026)
chr7 (79-129)||(36611550-36611600)
[»] chr4 (6 HSPs)
chr4 (80-128)||(51386456-51386504)
chr4 (61-128)||(34450815-34450882)
chr4 (79-128)||(14527575-14527624)
chr4 (79-128)||(45393981-45394030)
chr4 (74-131)||(56227049-56227106)
chr4 (81-133)||(24666124-24666176)
[»] chr2 (1 HSPs)
chr2 (79-128)||(20606920-20606969)
[»] chr3 (4 HSPs)
chr3 (84-131)||(47571943-47571990)
chr3 (78-115)||(54308466-54308503)
chr3 (56-128)||(18745346-18745418)
chr3 (84-132)||(49349672-49349720)
[»] chr6 (1 HSPs)
chr6 (86-128)||(5312241-5312283)
[»] chr8 (1 HSPs)
chr8 (91-128)||(42664008-42664045)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 16194470 - 16194361
Alignment:
Q  10 ggagcagagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacc 109  Q
    |||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |    
T  16194470 ggagcaaagatccagtgtggtaataagtaatgaaattctagagacatatttaatctgacggtggaataaagtggttcactgatgatggacttaattgatc 16194371  T
Q  110 cctcactcta 119  Q
    ||||||||||    
T  16194370 cctcactcta 16194361  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 39946555 - 39946640
Alignment:
Q  10 ggagcagagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtgag 95  Q
    |||||| ||||||| |||||||||||||||||||||| | ||||| |||||||||| | |||| ||| ||||||||||||||||||    
T  39946555 ggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacgtatttaatctaacggtgaaattaagtggttcactggtgag 39946640  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 29595541 - 29595642
Alignment:
Q  27 tggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattca 126  Q
    |||| |||| |||||| ||| ||||| | |||||||||| |||||  |||||| |||| |||||||||||||||||||||| ||||||| ||| ||| ||    
T  29595541 tggttataaataatgagatcttatagtcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatcca 29595640  T
Q  127 cc 128  Q
    ||    
T  29595641 cc 29595642  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 39945914 - 39945857
Alignment:
Q  58 tttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcac 115  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||||||  |||||||    
T  39945914 tttaatctgacggtggaataaagtggtacaccgatgagggacttaattggtccctcac 39945857  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 16195107 - 16195177
Alignment:
Q  58 tttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||| |||||||||| ||||| |||  |||| |||||||||||| ||||||| ||| ||| ||||    
T  16195107 tttaatctgacggtggaataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 6942308 - 6942203
Alignment:
Q  10 ggagcagagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacc 109  Q
    |||||| |||| || |||||||||||||| ||||||| | |||||||||||||||| | |||||||||||||||||||| | ||| |||||||||||| |    
T  6942308 ggagcaaagattcagtgtggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttcaccgatgaaggacttaattgatc 6942209  T
Q  110 cctcac 115  Q
    ||||||    
T  6942208 cctcac 6942203  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 2261543 - 2261591
Alignment:
Q  80 gtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  2261543 gtggttcactggtgaggggcttaattgaaccctcaccctaaaattcacc 2261591  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 12449312 - 12449363
Alignment:
Q  80 gtggttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 131  Q
    ||||| ||| |||||||||||||||||| ||||||| ||||||| |||||||    
T  12449312 gtggtccaccggtgagggacttaattgatccctcaccctaaaatccaccgtt 12449363  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 30581265 - 30581314
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  30581265 agtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 36611737 - 36611782
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaatt 124  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  36611737 agtggttcactgatgagggacttaattgaaccctcaccctaaaatt 36611782  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 3315026 - 3314968
Alignment:
Q  57 atttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcac 115  Q
    ||||||||  |||||  ||||||||||| ||| |||||||||||||||||| |||||||    
T  3315026 atttaatccaatggttaaataaagtggtacaccggtgagggacttaattgaaccctcac 3314968  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 36611600 - 36611550
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaattcaccg 129  Q
    |||||||||| |||||||||||||||||| ||||||| ||| |||| ||||    
T  36611600 agtggttcaccggtgagggacttaattgaaccctcaccctagaatttaccg 36611550  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 51386504 - 51386456
Alignment:
Q  80 gtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  51386504 gtggttcactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 34450882 - 34450815
Alignment:
Q  61 aatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    ||||| |||||||  ||||||| | ||| |||||||||||||||||| ||||||| ||| ||||||||    
T  34450882 aatctaatggtggcttaaagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||| ||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 45394030 - 45393981
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||| ||| || ||||||||||| ||||||||||| ||||||||    
T  45394030 agtggttcaccggtaagagacttaattgaaccctcactctagaattcacc 45393981  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 56227049 - 56227106
Alignment:
Q  74 aataaagtggttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 131  Q
    ||||||||||| ||| ||||| |||||| ||||| ||||||||||| ||| |||||||    
T  56227049 aataaagtggtacaccggtgaaggacttcattgagccctcactctagaatccaccgtt 56227106  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 24666176 - 24666124
Alignment:
Q  81 tggttcactggtgagggacttaattgacccctcactctaaaattcaccgttat 133  Q
    |||||||| |||||||||||||||||| ||||||| ||| ||| |||| ||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccattat 24666124  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 20606920 - 20606969
Alignment:
Q  79 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  20606920 agtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 47571943 - 47571990
Alignment:
Q  84 ttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 131  Q
    ||||| |||||||||||||||||| ||||||| ||| |||||||||||    
T  47571943 ttcaccggtgagggacttaattgatccctcaccctagaattcaccgtt 47571990  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 54308503 - 54308466
Alignment:
Q  78 aagtggttcactggtgagggacttaattgacccctcac 115  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  54308503 aagtggttcaccggtgagggacttaattgaaccctcac 54308466  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 18745346 - 18745418
Alignment:
Q  56 tatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||| |||||  |||  |||||| ||| |||||||||||| ||||| ||||||| ||| ||||||||    
T  18745346 tatttaatctaatggtcaaattcagtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 49349720 - 49349672
Alignment:
Q  84 ttcactggtgagggacttaattgacccctcactctaaaattcaccgtta 132  Q
    ||||| |||||||||||||||||| ||||||| ||| ||| ||||||||    
T  49349720 ttcaccggtgagggacttaattgatccctcaccctagaatccaccgtta 49349672  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 5312283 - 5312241
Alignment:
Q  86 cactggtgagggacttaattgacccctcactctaaaattcacc 128  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  5312283 cactggtgagggacttaattgaaccctcactgtagaattcacc 5312241  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 42664008 - 42664045
Alignment:
Q  91 gtgagggacttaattgacccctcactctaaaattcacc 128  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  42664008 gtgagggacttaattgaaccctcaccctaaaattcacc 42664045  T

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