View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12005_low_7 (Length: 225)

Name: NF12005_low_7
Description: NF12005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12005_low_7
NF12005_low_7
[»] chr7 (2 HSPs)
chr7 (1-144)||(22684389-22684532)
chr7 (27-79)||(23423220-23423271)
[»] chr3 (2 HSPs)
chr3 (29-69)||(14782856-14782896)
chr3 (29-69)||(9198640-9198680)
[»] chr6 (1 HSPs)
chr6 (27-69)||(10764084-10764126)
[»] chr8 (2 HSPs)
chr8 (29-74)||(26456448-26456492)
chr8 (33-97)||(14226973-14227036)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 22684532 - 22684389
Alignment:
Q  1 gtctgacatggatacgacatcgatcaacacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtgttg 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |    
T  22684532 gtctgacatggatacgacatcgatcgatacatgtgattacgttcaattaactcatattttcaaatttttcacccgtgtcaatgtgtctgtgtcagtgtcg 22684433  T
Q  101 atttgccgtgtccttgtttgtggaagtgcttcataggtgcattg 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  22684432 atttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg 22684389  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
Q  27 acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc 79  Q
    |||||||||||||| ||||||||| |||| | ||||||||||| |||||||||    
T  23423220 acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc 23423271  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
Q  29 acatgtgattacgttcaattaactcatattttcaaattttt 69  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  14782856 acatgtgattacgttcaattaattcattttttcaaattttt 14782896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
Q  29 acatgtgattacgttcaattaactcatattttcaaattttt 69  Q
    ||||||||||| |||||||||| |||| |||||||||||||    
T  9198640 acatgtgattatgttcaattaattcattttttcaaattttt 9198680  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
Q  27 acacatgtgattacgttcaattaactcatattttcaaattttt 69  Q
    ||||||| |||||||||||||||| |||| |||||||||||||    
T  10764084 acacatgcgattacgttcaattaattcattttttcaaattttt 10764126  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
Q  29 acatgtgattacgttcaattaactcatattttcaaatttttcacca 74  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||    
T  26456492 acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca 26456448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
Q  33 gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg 97  Q
    ||||||| |||||||||| |||| ||||||||||||| |   |||||||||||| ||||||||||    
T  14227036 gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg 14226973  T

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