View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12007_high_2 (Length: 435)
Name: NF12007_high_2
Description: NF12007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12007_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 54499124 - 54498701
Alignment:
| Q |
20 |
catgtccattaattaagaatattgaatatttatcaaataacaaatatttaaatttgttagattagtgctgtcatcgtaaatgtgttttcc---------- |
109 |
Q |
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| T |
54499124 |
catgtccattaattaagaatattgaatatttatcaaataacaaatatttaaatttgttagattagtgctgtcatcgtaaatgtgttttccttaatctaaa |
54499025 |
T |
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| Q |
110 |
-------aggaaaacatataactttcaaagtgtatttaataatcaagcgataagatatgtgtgtatcacaattattcacttaagat---------gggga |
193 |
Q |
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| T |
54499024 |
attttccaggaaaacatataactttcaaagtgtatttaataatcaagcaataagatatgtgcgtatcacaattattcacttaagattgacaccatgggga |
54498925 |
T |
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| Q |
194 |
tgcttctttcacaaatgtttttccctctgatcatgtttattaccggttgtttttgtcctagtagagcccaagattgtggtggaagtaatgttcaaaatac |
293 |
Q |
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| T |
54498924 |
tgcttctttcacaaatgtttttccctctaatcatgtttattactggttgtttttgtcttagtagagcccaagattgtggtggaagtaatgttcaaaatac |
54498825 |
T |
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| Q |
294 |
agtcattgttgaccaacaaccgggaaagggtaattatacaacaatcatatctgcctgccatatattctatagagcaaaataacaatcaatggtttaagat |
393 |
Q |
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| T |
54498824 |
agtcattgttgaccaacaaccgggaaagggtaattatacaacaatcatatctgcctgccatatattctatagagcaaaataacaatcaatggtttaagat |
54498725 |
T |
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| Q |
394 |
taacataaatccgggcgtctattg |
417 |
Q |
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| T |
54498724 |
tcacataaatccgggcatctattg |
54498701 |
T |
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