View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12007_high_3 (Length: 345)
Name: NF12007_high_3
Description: NF12007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12007_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 34972285 - 34971965
Alignment:
| Q |
18 |
ttacacatgttcacaaaacaaaggtatccacttggtaagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcattt |
117 |
Q |
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| T |
34972285 |
ttacacatgttcacaaaacaaaggtatccacttggtaagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcattt |
34972186 |
T |
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| Q |
118 |
gtgggtaatagataaatatctttatatgatctttgagtctctagattttctctaacactgatataaactctgaaaattcaactcacacaaacatataatt |
217 |
Q |
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| T |
34972185 |
gtgggtaatagataagtatctttatatgatctttgagtctctagattttctctaacactgatattaactctgaaaattcaactcacacaaacatataatt |
34972086 |
T |
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| Q |
218 |
atccatagaaaaagatagtaaggtgttgttaaactttaaagttagataagatattaactaataattgttgttctcgcctgagatatttaagtcaaacctg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34972085 |
atccatagaaaaagatagtaaggtgttgttaaactttaaagttagatgagatatcaactaataattgttgttctcgcctgagatttttaagtcaaacctg |
34971986 |
T |
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| Q |
318 |
gtagattgagccacaggttct |
338 |
Q |
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|||||||||||| |||||||| |
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| T |
34971985 |
gtagattgagcctcaggttct |
34971965 |
T |
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