View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12007_low_4 (Length: 343)
Name: NF12007_low_4
Description: NF12007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12007_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 50677551 - 50677274
Alignment:
| Q |
56 |
ttaatccaaacataggttcactggtcactcattgtttcttcttttagtagtatttcttactgatatataagtctgcaaaattagagaaaaggacatgtag |
155 |
Q |
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| T |
50677551 |
ttaatccaaacataggttcactggtcactcattgtttcttcttttagtagtatttcttactgatatataagtctgcaaaattagagaaaaggacatgtag |
50677452 |
T |
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| Q |
156 |
atgtgttaaatattaacaaaataaaatctatattgtttttcttaatttctgggccggattttggggtgtgtaaagagctcaatggagttgggccttccca |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50677451 |
atgtgttaaatattaacaaaataaaatctatattgtttttcttaatttcagggccggattttgggatgtgtaaagagctcaatggagttgggccttccca |
50677352 |
T |
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| Q |
256 |
aagtatgtgcctcgnnnnnnnnttataatcctttggtactaccacactnnnnnnntttccctattctctttctctctg |
333 |
Q |
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|||||||||||||| ||||| |||| ||||||||||||||| ||| | ||||||||||||||||| |
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| T |
50677351 |
aagtatgtgcctcgaaaaaaaattatagtcctgtggtactaccacactaaattttttttcttattctctttctctctg |
50677274 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 27237821 - 27237777
Alignment:
| Q |
206 |
gggccggattttggggtgtgtaaagagctcaatggagttgggcct |
250 |
Q |
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| T |
27237821 |
gggccggactttggggtgtgcaaagagctcaatggagttgggcct |
27237777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 38009546 - 38009490
Alignment:
| Q |
206 |
gggccggattttggggtgtgtaaagagctcaatggagttgggccttcccaaagtatg |
262 |
Q |
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| T |
38009546 |
gggccggaccttggggtgtgtaaagagctcaatggagctgagcctccccaaggtatg |
38009490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 36869623 - 36869568
Alignment:
| Q |
206 |
gggccggattttggggtgtgtaaagagctcaatggagttgggccttcccaaagtatg |
262 |
Q |
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| T |
36869623 |
gggccggactttgggg-gtgcaaagagctcaatggagttgggacttcccaaggtatg |
36869568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 4036798 - 4036850
Alignment:
| Q |
216 |
ttggggtgtgtaaagagctcaatggagttgggccttcccaaagtatgtgcctc |
268 |
Q |
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| T |
4036798 |
ttggggtgtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctc |
4036850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 10252125 - 10252173
Alignment:
| Q |
206 |
gggccggattttggggtgtgtaaagagctcaatggagttgggccttccc |
254 |
Q |
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| T |
10252125 |
gggccggatcttggggtgtgcaaagagctcaacgtagttggaccttccc |
10252173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 11913139 - 11913095
Alignment:
| Q |
206 |
gggccggattttggggtgtgtaaagagctcaatggagttgggcct |
250 |
Q |
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|||| ||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
11913139 |
gggctggactttggggtgtgcaaagagttcaatggagttgggcct |
11913095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 13800903 - 13800851
Alignment:
| Q |
216 |
ttggggtgtgtaaagagctcaatggagttgggccttcccaaagtatgtgcctc |
268 |
Q |
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|||||||||| ||| ||||||||||||||||| ||| |||| ||||| ||||| |
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| T |
13800903 |
ttggggtgtgcaaaaagctcaatggagttgggtctttccaaggtatgagcctc |
13800851 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 39135116 - 39135064
Alignment:
| Q |
216 |
ttggggtgtgtaaagagctcaatggagttgggccttcccaaagtatgtgcctc |
268 |
Q |
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| T |
39135116 |
ttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcctc |
39135064 |
T |
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