View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12007_low_5 (Length: 302)

Name: NF12007_low_5
Description: NF12007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12007_low_5
NF12007_low_5
[»] chr1 (8 HSPs)
chr1 (18-287)||(15035524-15035793)
chr1 (128-287)||(14502740-14502899)
chr1 (18-138)||(14524472-14524592)
chr1 (19-138)||(14502199-14502318)
chr1 (27-138)||(14534449-14534560)
chr1 (128-281)||(14523897-14524050)
chr1 (199-258)||(14534329-14534388)
chr1 (21-101)||(14466094-14466174)
[»] scaffold0400 (2 HSPs)
scaffold0400 (18-287)||(10995-11264)
scaffold0400 (19-76)||(5500-5557)
[»] scaffold0365 (2 HSPs)
scaffold0365 (18-287)||(11638-11907)
scaffold0365 (19-76)||(6144-6201)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 15035524 - 15035793
Alignment:
Q  18 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15035524 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtacaaactatcctatcttgatctc 15035623  T
Q  118 agctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattc 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||    
T  15035624 agctttaattatctcaccgggtctatctcaatttctataggaaagttggccaaaataaaaaatctcatgttacattcgaatcaactttttggccagattc 15035723  T
Q  218 ctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 287  Q
    ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15035724 ctcgtgaaattgggaatttggtcaacctccagagactatatcttggaaataacagtctttttggcttcat 15035793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 287
Target Start/End: Original strand, 14502740 - 14502899
Alignment:
Q  128 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 227  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||| |||||||    ||| |||||||||||||| ||||||| ||||||| ||||||    
T  14502740 atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat 14502839  T
Q  228 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 287  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||  ||||||||||||||    
T  14502840 tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcat 14502899  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 14524592 - 14524472
Alignment:
Q  18 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctc 117  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| |||||||||||     
T  14524592 aatgtgcaatctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactatcctatcttgatctt 14524493  T
Q  118 agctttaattatctcactggg 138  Q
    ||||| |||||||||||||||    
T  14524492 agcttcaattatctcactggg 14524472  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 14502199 - 14502318
Alignment:
Q  19 atgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctca 118  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||||| ||||||||| |   |||||||||||||||||||||| |||||||||||||    
T  14502199 atgtcaaacctagacactcttgatttgtcactaaataatctctctggtaacattcccaaaagtgttggtaatttgtccaaactatcttatcttgatctca 14502298  T
Q  119 gctttaattatctcactggg 138  Q
    | || |||||||||| ||||    
T  14502299 gtttcaattatctcattggg 14502318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 14534560 - 14534449
Alignment:
Q  27 tctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaat 126  Q
    |||| ||||||||||||||||| | ||  | |||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| || |||    
T  14534560 tctaaaaactcttgatttgtcagttaacaatctctctggtaccattcccaatagcattggtaatttgtcaaaaatatcttatcttgatctcagtttcaat 14534461  T
Q  127 tatctcactggg 138  Q
    ||||||||||||    
T  14534460 tatctcactggg 14534449  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 281
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
Q  128 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 227  Q
    ||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| |   ||| ||||||||||||||||||||||  |||||    
T  14524050 atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat 14523951  T
Q  228 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg 281  Q
    ||||||||| ||||||||| ||| |||  |||||||| |||| | |||||||||    
T  14523950 tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg 14523897  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
Q  199 caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat 258  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  14534388 caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat 14534329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 14466094 - 14466174
Alignment:
Q  21 gtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaact 101  Q
    |||||||||||| ||| |||| ||||||   |||||||||||||||   ||||||| ||||||||||  | ||||||||||    
T  14466094 gtccaatctagatactattgagttgtcatataatgaactctctggtcatattcccagtaccattggttttctgtccaaact 14466174  T

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Target: scaffold0400 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 10995 - 11264
Alignment:
Q  18 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10995 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatcctatcttgatctc 11094  T
Q  118 agctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattc 217  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11095 agctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttcggccacattc 11194  T
Q  218 ctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 287  Q
    ||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11195 ctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 5500 - 5557
Alignment:
Q  19 atgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 76  Q
    ||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  5500 atgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 5557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 11638 - 11907
Alignment:
Q  18 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  11638 aatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatcctatcttgatctc 11737  T
Q  118 agctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattc 217  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11738 agctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttcggccacattc 11837  T
Q  218 ctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat 287  Q
    ||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11838 ctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat 11907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 6144 - 6201
Alignment:
Q  19 atgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 76  Q
    ||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  6144 atgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 6201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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