View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_high_1 (Length: 613)
Name: NF12008_high_1
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Complemental strand, 41706264 - 41705687
Alignment:
| Q |
17 |
agttataaaatttctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgc |
116 |
Q |
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| T |
41706264 |
agttataaaatttctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgc |
41706165 |
T |
|
| Q |
117 |
tggaacggtcttttttccgacagagattcctttcaagccaacagtgtaaaaataaggatgttttggattttcaagcattgaagtataaacaaactcaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706164 |
tggaacggtcttttttccgacagagattcctttcaagccaacagtgtaaaaataagaatgttttggattttcaagcattgaagtataaacaaactcaaca |
41706065 |
T |
|
| Q |
217 |
acttcatcaccattgctctgtttttcatcattgtaacgacctaatatgagtggacttggttttcgaattcgttcagaacgaaaagaatgagaaaccaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706064 |
acttcatcaccattgctctgtttttcatcattgtaacgacctaatatgagtggacttggttttcgaattcgttcagaacgaaaagaatgagaaaccaaac |
41705965 |
T |
|
| Q |
317 |
aataagaaaaacggtttccaagttgaggagagtgagtagctaactgagctgggagagaaagtaatccacgaccgaagccagcgactccggtgggttcgga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705964 |
aataagaaaaacggtttccaagttgaggagagtgagtagctaactgagctgggagagaaagtaatccacgaccgaagccagcgactccggtgggttcgga |
41705865 |
T |
|
| Q |
417 |
gaaagttgtatgagcacaaccgaatgtgaattttgtaagttgaagagtagaaagagaaagtgtatcgcgatagagagaagctattaagcttccatcgccg |
516 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705864 |
gaaagttgtatgagcacaaccgaatgtgaagtttgtaagttgaagagtagaaagagaaagtgtatcgcgatagagagaagctattaagcttccatcgccg |
41705765 |
T |
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| Q |
517 |
taagcgtagtagaatggtggacagtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccatt |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705764 |
taagcgtagtagaatggtggacagtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccatt |
41705687 |
T |
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