View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_high_2 (Length: 499)
Name: NF12008_high_2
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 1235609 - 1236078
Alignment:
| Q |
16 |
atatataaatctaagcagtttaataaaattataattgtatataacagagtcaagtccagctaagagttcactgaattaaacactttctgttctttaaaat |
115 |
Q |
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| T |
1235609 |
atatataaatctaagcagtttaacaaaattataattgtatataacagagtcaagtccagctaagagttcactgaattaaacactttctgttctttaaaat |
1235708 |
T |
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| Q |
116 |
gtttccctttttcttcattttggtcttcaaatgtattttagttggagaatcaaaatagggtccgctggtagcatttttgggcaatctagaacgatgtcac |
215 |
Q |
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| T |
1235709 |
gtttccctttttcttcattttggtcttcaaatgtattttagttggagaatcaaaatagggtccgctggtagcatttttggccaatctagaacgatgtcac |
1235808 |
T |
|
| Q |
216 |
gctcattttggaccaacatgtaggagtgtgatatataataataatttgatactccatattttaggcattacatgcaacttcttttacccctcctcatttt |
315 |
Q |
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| T |
1235809 |
gctcattttggaccaacatgtaggagtgtgatat---ataataatttgatactccatattttaggcattacatgcaacttcttttacccctcctcatttt |
1235905 |
T |
|
| Q |
316 |
tcttgactttgttgttcatgttcatctgtttgtgaatcttcattatccttaaccatctgattattgttgttgaggttgcttttatcttcttctatagacc |
415 |
Q |
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| T |
1235906 |
tcttgactttgttgttcatgttcatctgtttgtgaatcttcattatccttaaccatctgattattgttgttgaggttgcttttatctttttctatagacc |
1236005 |
T |
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| Q |
416 |
tcacaactatttcaacttggtcaaattcatgtgggttttttgatggcactaattgattctttttcttcatctc |
488 |
Q |
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| T |
1236006 |
tcacaactatttcaactgggtcaaattcatgtgggttttttgatggcactaattgattctttttcttcatctc |
1236078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 915996 - 916070
Alignment:
| Q |
414 |
cctcacaactatttcaacttggtcaaattcatgtgggttttttgatggcactaattgattctttttcttcatctc |
488 |
Q |
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|||||||||||||||||| ||||||||||| | | ||| |||||||||||||||||| |||||||||||||| |
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| T |
915996 |
cctcacaactatttcaacagtgtcaaattcattggagctttgtgatggcactaattgattatttttcttcatctc |
916070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 628702 - 628591
Alignment:
| Q |
16 |
atatataaatctaagcagtttaataaaattataattgtatataacagagtcaagtccagctaagagttcactgaattaaacactttctgttctttaaaat |
115 |
Q |
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||||||||| |||||||||||| ||||||| ||| ||||| ||||| | |||||| || ||||| | ||| ||||| |||| | ||| |||| |||| |
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| T |
628702 |
atatataaacctaagcagtttagtaaaattctaagtgtatctaacacaatcaagttcatctaaggctccacccaattagacaccctttgtcctttgaaat |
628603 |
T |
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| Q |
116 |
gtttcccttttt |
127 |
Q |
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|||||||||||| |
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| T |
628602 |
gtttcccttttt |
628591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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