View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_high_3 (Length: 418)
Name: NF12008_high_3
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_high_3 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 418
Target Start/End: Complemental strand, 43241135 - 43240738
Alignment:
| Q |
21 |
gtgctttcataatttgatttagatgccaaacccttgcgctaggaatttccatttttcattatttcataatttgcttcatatatcaaacactttgcactta |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43241135 |
gtgctttcataatttgatttagatgccaaacccttgcgctaggaatttccatttttcattatttcgtaatttgcttcatatatcaaacactttgcactta |
43241036 |
T |
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| Q |
121 |
caatctacaagaaaaaattattcaaatgtaaagtaaaacactctacatattcaaccatcgatatactaagttacaaagaccacgatgtccattgaatata |
220 |
Q |
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| T |
43241035 |
caatctacaagaagaaattattcaaatgtaaagtaaaacactctacatattcaaccatcgatatactaagttacaaagaccacgatgtccattgaatata |
43240936 |
T |
|
| Q |
221 |
atacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttattatttttgcagccaattcaacaatcatagaatttccta |
320 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
43240935 |
atacgggagacatttatttaagatcatcgaaaaagccaatgtagatatgataaggcatttataatttttgcagccaattcaacaatcatggaatttccta |
43240836 |
T |
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| Q |
321 |
atgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaaattcc |
418 |
Q |
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| T |
43240835 |
atgaagtgtagtaatgttgtctagtttacaatcataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaaattcc |
43240738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 43235828 - 43235667
Alignment:
| Q |
24 |
ctttcataatttgatttagatgccaaacccttgcgctaggaatttccatttttcattatttcataatttgcttcatatatcaaacactttgcacttacaa |
123 |
Q |
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|||||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||||| |||||||||||| |||| ||| | || ||||||||| |
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| T |
43235828 |
ctttcataatttgatttagatgtcaaacatttaaactaagaatttccatttttctttatttcctaatttgcttcagatataaaaaagtt-gcacttacat |
43235730 |
T |
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| Q |
124 |
tctacaagaaaaaattattcaaatgtaaagtaaaacactctacatattcaaccatcgatatac |
186 |
Q |
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||| |||||| |||| ||||||||||||||||||| || |||||||| ||||||| ||||||| |
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| T |
43235729 |
tctgcaagaagaaataattcaaatgtaaagtaaaataccctacatatccaaccattgatatac |
43235667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 38927688 - 38927825
Alignment:
| Q |
277 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
376 |
Q |
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|||||||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
38927688 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
38927785 |
T |
|
| Q |
377 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
417 |
Q |
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| |||||||||| |||||||||||| |||| ||||||||| |
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| T |
38927786 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattc |
38927825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 43230225 - 43230152
Alignment:
| Q |
211 |
attgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttatta |
284 |
Q |
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|||||||||||| ||||| ||||||| | ||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
43230225 |
attgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttatta |
43230152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 43246929 - 43246892
Alignment:
| Q |
247 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
43246929 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43246892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 43253394 - 43253357
Alignment:
| Q |
247 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
43253394 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43253357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 43230363 - 43230311
Alignment:
| Q |
47 |
caaacccttgcgctaggaatttccat-ttttcattatttcataatttgcttca |
98 |
Q |
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||||| ||||| |||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
43230363 |
caaacacttgcactaggaatttccattttttctttatttcgtaatttgcttca |
43230311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 3570745 - 3570882
Alignment:
| Q |
277 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
376 |
Q |
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|||||||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
3570745 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
3570842 |
T |
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| Q |
377 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
417 |
Q |
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| |||||||||| |||||||||||| |||| ||||||||| |
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| T |
3570843 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattc |
3570882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 46354114 - 46354251
Alignment:
| Q |
277 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
376 |
Q |
| |
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|||||||||| ||||| |||||||||| |||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||| |
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| T |
46354114 |
atttattattgttgcatccaattcaacgatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgattta |
46354211 |
T |
|
| Q |
377 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
417 |
Q |
| |
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| |||||||||| |||||||||||| |||||| ||||||| |
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| T |
46354212 |
aaaattaatgat-gtacaatagagaaaaatagctgaaattc |
46354251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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