View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12008_high_4 (Length: 362)

Name: NF12008_high_4
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12008_high_4
NF12008_high_4
[»] chr1 (13 HSPs)
chr1 (28-224)||(27215357-27215553)
chr1 (28-224)||(27221319-27221515)
chr1 (225-340)||(46354238-46354355)
chr1 (28-95)||(27207986-27208053)
chr1 (28-104)||(27443468-27443544)
chr1 (28-95)||(27433066-27433133)
chr1 (106-224)||(27443326-27443443)
chr1 (28-95)||(27410236-27410303)
chr1 (28-93)||(27415756-27415821)
chr1 (106-224)||(27208086-27208204)
chr1 (106-197)||(27455314-27455409)
chr1 (37-91)||(27455223-27455277)
chr1 (106-183)||(27433166-27433247)
[»] chr5 (2 HSPs)
chr5 (223-347)||(43240635-43240759)
chr5 (225-340)||(38927812-38927929)
[»] chr7 (1 HSPs)
chr7 (225-340)||(3570869-3570986)
[»] scaffold0039 (1 HSPs)
scaffold0039 (227-273)||(81013-81059)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 27215357 - 27215553
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27215357 gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttagtaagcgcatga 27215456  T
Q  128 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaa 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215457 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaa 27215553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 27221319 - 27221515
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27221319 gttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttaataagcgcatga 27221418  T
Q  128 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27221419 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgcaaa 27221515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 46354355 - 46354238
Alignment:
Q  225 ttattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttattgccactataaacttggtgggtgcaacatctaattatact 322  Q
    |||||||||| ||||| ||||||||||||||||||  ||||||||||||  || |||||||||||||||||| |||||| |||||| |||||||||||||    
T  46354355 ttattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaattttattgccactataaatttggtgtgtgcaatatctaattatact 46354256  T
Q  323 tgcggaatttcggctatt 340  Q
    ||| ||||||| ||||||    
T  46354255 tgcagaatttcagctatt 46354238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27207986 - 27208053
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27207986 gttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 27208053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 27443544 - 27443468
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatac 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||    
T  27443544 gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatac 27443468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27433066 - 27433133
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27433066 gttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcata 27433133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 27443443 - 27443326
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacg 202  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||||||   |||||||||||||  ||| ||||||||         
T  27443443 aatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----a 27443348  T
Q  203 taccgtagaagaggaatgcaaa 224  Q
    |||| |||||||||||||||||    
T  27443347 taccatagaagaggaatgcaaa 27443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27410236 - 27410303
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||||||||||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  27410236 gttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcata 27410303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 27415821 - 27415756
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgca 93  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| |||||    
T  27415821 gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgca 27415756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 27208086 - 27208204
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtac 201  Q
    |||||||||||||| | ||||||||||||| |||| |||||| ||||||    |||||| ||||||||||||||||||||||  ||| ||||||||        
T  27208086 aatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatat---- 27208181  T
Q  202 gtaccgtagaagaggaatgcaaa 224  Q
     |||| |||||||||||||||||    
T  27208182 ataccatagaagaggaatgcaaa 27208204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27455314 - 27455409
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatt----atatggaaaattaatgtagttatgtattgatatat 197  Q
    |||||||||||||| | ||||||||| ||| |||| |||||| |||||| ||| |||    |||||||||||||||||||||  ||||||||||||    
T  27455314 aatgaatttattaaccacatgaagagcaataaactaagctaaatgaattaattgatttactatatggaaaattaatgtagttgggtattgatatat 27455409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 27455223 - 27455277
Alignment:
Q  37 catacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactg 91  Q
    |||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||    
T  27455223 catacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg 27455277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 27433166 - 27433247
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatta----tatggaaaattaatgtagtt 183  Q
    |||||||||||||| | ||||||||| ||| || | |||||| |||||| ||| ||||    ||||||||||||||||||||    
T  27433166 aatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaaaattaatgtagtt 27433247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 43240635 - 43240759
Alignment:
Q  223 aattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagttttattgccactataaacttggtgggtgcaacatctaattatact 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43240635 aattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagtattattgccactataaacttggtgggtgcaacatctaattatact 43240734  T
Q  323 tgcggaatttcggctattcatctct 347  Q
    |||||||||||||||||||||||||    
T  43240735 tgcggaatttcggctattcatctct 43240759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 38927929 - 38927812
Alignment:
Q  225 ttattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttattgccactataaacttggtgggtgcaacatctaattatact 322  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||  || ||| ||||||||||||||||||||| |||||| |||||||||||||    
T  38927929 ttattgggtaagaaaaatgtaaaactaatagtactccaaatatacttctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatact 38927830  T
Q  323 tgcggaatttcggctatt 340  Q
    ||| ||||||||| ||||    
T  38927829 tgcagaatttcggatatt 38927812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 3570986 - 3570869
Alignment:
Q  225 ttattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttattgccactataaacttggtgggtgcaacatctaattatact 322  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||  || ||| ||||||||||||||||||||| |||||| |||||||||||||    
T  3570986 ttattgggtaagaaaaatgtaaaactaatagtactccaaatatacttctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatact 3570887  T
Q  323 tgcggaatttcggctatt 340  Q
    ||| ||||||||| ||||    
T  3570886 tgcagaatttcggatatt 3570869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 81013 - 81059
Alignment:
Q  227 attgggtaggaaaattgtaaaactaatagtactcaaaatatacttct 273  Q
    |||||||  ||||||||||||||||||||||||| | ||||||||||    
T  81013 attgggtgagaaaattgtaaaactaatagtactccatatatacttct 81059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University