View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_high_5 (Length: 343)
Name: NF12008_high_5
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 338
Target Start/End: Original strand, 36427473 - 36427706
Alignment:
| Q |
105 |
tttcccatgacaatatttactctttttgtttacnnnnnnnnaggtgtactcttattgtttacttattcatttcaaaaaataggtaaaataattagaggta |
204 |
Q |
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| T |
36427473 |
tttcccatgacaatatttactctttttgtttacttttttttaggtgtactcttattgtttacttattcatttcaaaaaataggtaaaataattagaggta |
36427572 |
T |
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| Q |
205 |
caaatttgacgaaagagtgtattttgaaaaaggataccaaaatttcaaaacagttcaatatttactcttactaaaacatgtaagacacgtatttccaaga |
304 |
Q |
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| T |
36427573 |
caaatttgacgaaagagtgtattttgaaaaaggataccaaaatttcaaaacagttcaatattaactcttactaaaacatgtaagacacgtatttccaaga |
36427672 |
T |
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| Q |
305 |
aagacatcaaagttaaggtactccctatgctact |
338 |
Q |
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| T |
36427673 |
aagacatcaaagttaaggtactccctatgttact |
36427706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 36426990 - 36427082
Alignment:
| Q |
18 |
cacttgatgtatcaaatcatagtgactaaaaggaagaaggatttaaagagatgtaaggaccagaagagggaatattcaaaagttgtttttccc |
110 |
Q |
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| T |
36426990 |
cacttgatgtatcaaatcatagtgactaaaaggaagaaggatttaaagagatgtaaggaccagaagagggaatattcaaaagttgtttttccc |
36427082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 36430132 - 36430172
Alignment:
| Q |
24 |
atgtatcaaatcatagtgactaaaaggaagaaggatttaaa |
64 |
Q |
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| T |
36430132 |
atgtatcaaatcatagtgactaaaagaaggagggatttaaa |
36430172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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